Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 30331 | 0.69 | 0.698357 |
Target: 5'- ---cCGAGGCCGcG-GCCgCGGACAa- -3' miRNA: 3'- aaauGCUCCGGCuCaCGG-GCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 30483 | 0.66 | 0.848634 |
Target: 5'- --gAgGAGGCCGGG-GCCuCGGAa--- -3' miRNA: 3'- aaaUgCUCCGGCUCaCGG-GCCUguau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 31275 | 0.69 | 0.656919 |
Target: 5'- ---cCGAGGCgGAGcgcGCCCGGGCcgAg -3' miRNA: 3'- aaauGCUCCGgCUCa--CGGGCCUGuaU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 31556 | 0.68 | 0.718765 |
Target: 5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3' miRNA: 3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 31670 | 0.69 | 0.698357 |
Target: 5'- ---cCGGGGCCGGcgcgcgccgGCCCGGACGc- -3' miRNA: 3'- aaauGCUCCGGCUca-------CGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 34321 | 0.67 | 0.785372 |
Target: 5'- --gGgGAGGCCGAGgggccccaagggGCCgGGGCGg- -3' miRNA: 3'- aaaUgCUCCGGCUCa-----------CGGgCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 34357 | 0.69 | 0.677716 |
Target: 5'- --gACGGGGCCGGGcGCCgCGcGGCGc- -3' miRNA: 3'- aaaUGCUCCGGCUCaCGG-GC-CUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 34699 | 0.67 | 0.796524 |
Target: 5'- ----gGGGGCCGAGgaggcggcggaUGCCgCGGACGc- -3' miRNA: 3'- aaaugCUCCGGCUC-----------ACGG-GCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 35305 | 0.66 | 0.848634 |
Target: 5'- --aGCGccGGGCCGGGcUGCUCGGGgAg- -3' miRNA: 3'- aaaUGC--UCCGGCUC-ACGGGCCUgUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 39584 | 0.67 | 0.796524 |
Target: 5'- -cUGgGGGGCCGAggaGUGgCUGGACGa- -3' miRNA: 3'- aaAUgCUCCGGCU---CACgGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 39728 | 0.66 | 0.839582 |
Target: 5'- gUUugGGGGgCGGGUGCCCcagucgcGGAUc-- -3' miRNA: 3'- aAAugCUCCgGCUCACGGG-------CCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 39942 | 0.66 | 0.831999 |
Target: 5'- ---cCGAGGCCGcGgacGCgCCGGGCGUc -3' miRNA: 3'- aaauGCUCCGGCuCa--CG-GGCCUGUAu -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 44880 | 0.67 | 0.787246 |
Target: 5'- --cGCGAGcGCCGcGGggaugGCCgGGGCGUAc -3' miRNA: 3'- aaaUGCUC-CGGC-UCa----CGGgCCUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 44964 | 0.68 | 0.758577 |
Target: 5'- -cUGCGGGacgcGCgCGAGgGCCCGGGCGg- -3' miRNA: 3'- aaAUGCUC----CG-GCUCaCGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 47244 | 0.66 | 0.856648 |
Target: 5'- --gACGAGGCCGAGguacuucuuCuuGGugAUGa -3' miRNA: 3'- aaaUGCUCCGGCUCac-------GggCCugUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 48301 | 0.68 | 0.738865 |
Target: 5'- --aGCGAGGCCucGGGgggcgcgucggGCCCGGGCu-- -3' miRNA: 3'- aaaUGCUCCGG--CUCa----------CGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 51464 | 0.68 | 0.708595 |
Target: 5'- --gACGAGGaCGucacGUGCCUGGACGa- -3' miRNA: 3'- aaaUGCUCCgGCu---CACGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 53310 | 0.83 | 0.110156 |
Target: 5'- --cGCGAGGCCGAGgcccGCCCGGAgGUGu -3' miRNA: 3'- aaaUGCUCCGGCUCa---CGGGCCUgUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 53855 | 0.66 | 0.831999 |
Target: 5'- --gGCGGcGGCCGAGgccgaGCCCgcGGGCGg- -3' miRNA: 3'- aaaUGCU-CCGGCUCa----CGGG--CCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 54089 | 0.66 | 0.840415 |
Target: 5'- --gGCGuGGCCGAG-GCCCGccaGCGa- -3' miRNA: 3'- aaaUGCuCCGGCUCaCGGGCc--UGUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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