Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 51464 | 0.68 | 0.708595 |
Target: 5'- --gACGAGGaCGucacGUGCCUGGACGa- -3' miRNA: 3'- aaaUGCUCCgGCu---CACGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 53310 | 0.83 | 0.110156 |
Target: 5'- --cGCGAGGCCGAGgcccGCCCGGAgGUGu -3' miRNA: 3'- aaaUGCUCCGGCUCa---CGGGCCUgUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 102636 | 0.74 | 0.39156 |
Target: 5'- --gGCGGGGCCGGGcgcugggGUCCGGGCGa- -3' miRNA: 3'- aaaUGCUCCGGCUCa------CGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 60132 | 0.72 | 0.502745 |
Target: 5'- ---cCGGGGCCGGG-GCCUGGGCcgGc -3' miRNA: 3'- aaauGCUCCGGCUCaCGGGCCUGuaU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 78373 | 0.71 | 0.532706 |
Target: 5'- -cUACGAGGCCGAcGU-CCCGcGCAUGg -3' miRNA: 3'- aaAUGCUCCGGCU-CAcGGGCcUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 98362 | 0.71 | 0.583927 |
Target: 5'- --cGCGGccugcuGGCCGuGUGCCUGGGCGc- -3' miRNA: 3'- aaaUGCU------CCGGCuCACGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 79905 | 0.7 | 0.604717 |
Target: 5'- --cGCGAGGC--GGUGCUCGGGCGg- -3' miRNA: 3'- aaaUGCUCCGgcUCACGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 96115 | 0.7 | 0.615147 |
Target: 5'- --gACGAGGCCGGGcUGCugggCCGGcACAUc -3' miRNA: 3'- aaaUGCUCCGGCUC-ACG----GGCC-UGUAu -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 79350 | 0.7 | 0.625591 |
Target: 5'- -cUGCGAGGCCc---GCCCGGACc-- -3' miRNA: 3'- aaAUGCUCCGGcucaCGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 24624 | 0.7 | 0.646485 |
Target: 5'- --aACuuGGCCagcGGGUGCCCGGGCGc- -3' miRNA: 3'- aaaUGcuCCGG---CUCACGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 70043 | 0.7 | 0.646485 |
Target: 5'- --gGCGGGGgCGAGgggGCCCGcGGCGc- -3' miRNA: 3'- aaaUGCUCCgGCUCa--CGGGC-CUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 103772 | 0.7 | 0.646485 |
Target: 5'- -gUACGGGGCCcccggcccGUGCCCGGcGCGUu -3' miRNA: 3'- aaAUGCUCCGGcu------CACGGGCC-UGUAu -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 31275 | 0.69 | 0.656919 |
Target: 5'- ---cCGAGGCgGAGcgcGCCCGGGCcgAg -3' miRNA: 3'- aaauGCUCCGgCUCa--CGGGCCUGuaU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 56842 | 0.69 | 0.667332 |
Target: 5'- --gGgGAGGCCGGGaGCCCGG-CGc- -3' miRNA: 3'- aaaUgCUCCGGCUCaCGGGCCuGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 19359 | 0.69 | 0.677716 |
Target: 5'- --cGCGGuGGCCGAGgccaggGCCgCGGGCGc- -3' miRNA: 3'- aaaUGCU-CCGGCUCa-----CGG-GCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 90787 | 0.69 | 0.677716 |
Target: 5'- --aGCG-GGCCGGGcGCCuguCGGACGUGu -3' miRNA: 3'- aaaUGCuCCGGCUCaCGG---GCCUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 23232 | 0.69 | 0.698357 |
Target: 5'- --cGCGGGGCCGGG-GCCgCGG-CGg- -3' miRNA: 3'- aaaUGCUCCGGCUCaCGG-GCCuGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 30331 | 0.69 | 0.698357 |
Target: 5'- ---cCGAGGCCGcG-GCCgCGGACAa- -3' miRNA: 3'- aaauGCUCCGGCuCaCGG-GCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 31670 | 0.69 | 0.698357 |
Target: 5'- ---cCGGGGCCGGcgcgcgccgGCCCGGACGc- -3' miRNA: 3'- aaauGCUCCGGCUca-------CGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 136073 | 0.68 | 0.718765 |
Target: 5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3' miRNA: 3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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