miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 136073 0.68 0.718765
Target:  5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3'
miRNA:   3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 31275 0.69 0.656919
Target:  5'- ---cCGAGGCgGAGcgcGCCCGGGCcgAg -3'
miRNA:   3'- aaauGCUCCGgCUCa--CGGGCCUGuaU- -5'
23580 5' -56.4 NC_005261.1 + 56842 0.69 0.667332
Target:  5'- --gGgGAGGCCGGGaGCCCGG-CGc- -3'
miRNA:   3'- aaaUgCUCCGGCUCaCGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 19359 0.69 0.677716
Target:  5'- --cGCGGuGGCCGAGgccaggGCCgCGGGCGc- -3'
miRNA:   3'- aaaUGCU-CCGGCUCa-----CGG-GCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 90787 0.69 0.677716
Target:  5'- --aGCG-GGCCGGGcGCCuguCGGACGUGu -3'
miRNA:   3'- aaaUGCuCCGGCUCaCGG---GCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 23232 0.69 0.698357
Target:  5'- --cGCGGGGCCGGG-GCCgCGG-CGg- -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGG-GCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 30331 0.69 0.698357
Target:  5'- ---cCGAGGCCGcG-GCCgCGGACAa- -3'
miRNA:   3'- aaauGCUCCGGCuCaCGG-GCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 31670 0.69 0.698357
Target:  5'- ---cCGGGGCCGGcgcgcgccgGCCCGGACGc- -3'
miRNA:   3'- aaauGCUCCGGCUca-------CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 51464 0.68 0.708595
Target:  5'- --gACGAGGaCGucacGUGCCUGGACGa- -3'
miRNA:   3'- aaaUGCUCCgGCu---CACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 103772 0.7 0.646485
Target:  5'- -gUACGGGGCCcccggcccGUGCCCGGcGCGUu -3'
miRNA:   3'- aaAUGCUCCGGcu------CACGGGCC-UGUAu -5'
23580 5' -56.4 NC_005261.1 + 70043 0.7 0.646485
Target:  5'- --gGCGGGGgCGAGgggGCCCGcGGCGc- -3'
miRNA:   3'- aaaUGCUCCgGCUCa--CGGGC-CUGUau -5'
23580 5' -56.4 NC_005261.1 + 24624 0.7 0.646485
Target:  5'- --aACuuGGCCagcGGGUGCCCGGGCGc- -3'
miRNA:   3'- aaaUGcuCCGG---CUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 120867 0.77 0.270501
Target:  5'- aUUGCGAgagucggaccugGGCgGGGUGCCCGGGCGg- -3'
miRNA:   3'- aAAUGCU------------CCGgCUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 102636 0.74 0.39156
Target:  5'- --gGCGGGGCCGGGcgcugggGUCCGGGCGa- -3'
miRNA:   3'- aaaUGCUCCGGCUCa------CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 60132 0.72 0.502745
Target:  5'- ---cCGGGGCCGGG-GCCUGGGCcgGc -3'
miRNA:   3'- aaauGCUCCGGCUCaCGGGCCUGuaU- -5'
23580 5' -56.4 NC_005261.1 + 78373 0.71 0.532706
Target:  5'- -cUACGAGGCCGAcGU-CCCGcGCAUGg -3'
miRNA:   3'- aaAUGCUCCGGCU-CAcGGGCcUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 98362 0.71 0.583927
Target:  5'- --cGCGGccugcuGGCCGuGUGCCUGGGCGc- -3'
miRNA:   3'- aaaUGCU------CCGGCuCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 79905 0.7 0.604717
Target:  5'- --cGCGAGGC--GGUGCUCGGGCGg- -3'
miRNA:   3'- aaaUGCUCCGgcUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 96115 0.7 0.615147
Target:  5'- --gACGAGGCCGGGcUGCugggCCGGcACAUc -3'
miRNA:   3'- aaaUGCUCCGGCUC-ACG----GGCC-UGUAu -5'
23580 5' -56.4 NC_005261.1 + 79350 0.7 0.625591
Target:  5'- -cUGCGAGGCCc---GCCCGGACc-- -3'
miRNA:   3'- aaAUGCUCCGGcucaCGGGCCUGuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.