miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 607 0.67 0.777822
Target:  5'- --cGCgGAGGgCGAGUGCCC-GACGc- -3'
miRNA:   3'- aaaUG-CUCCgGCUCACGGGcCUGUau -5'
23580 5' -56.4 NC_005261.1 + 2945 0.67 0.768263
Target:  5'- ---cCGcGGCCGGGcuccgGCCCGGACu-- -3'
miRNA:   3'- aaauGCuCCGGCUCa----CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 5505 0.67 0.790975
Target:  5'- -gUGCGGGGCCGccggcaaugagguagGGcGCCgGGACGg- -3'
miRNA:   3'- aaAUGCUCCGGC---------------UCaCGGgCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 6023 0.68 0.728859
Target:  5'- --cGCGuGGCgCGGGcggGCCCGGACc-- -3'
miRNA:   3'- aaaUGCuCCG-GCUCa--CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 8455 0.67 0.814607
Target:  5'- --gGCGaAGGCCGGGccgaGCCCGG-CGg- -3'
miRNA:   3'- aaaUGC-UCCGGCUCa---CGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 9509 0.67 0.805647
Target:  5'- -cUACGGcGGgCGGGcgggGCCCGGGCGc- -3'
miRNA:   3'- aaAUGCU-CCgGCUCa---CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 11698 0.66 0.840415
Target:  5'- --cGCGuGGCCGAGgcgcggcggGCgCGGGCGc- -3'
miRNA:   3'- aaaUGCuCCGGCUCa--------CGgGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 15721 0.68 0.728859
Target:  5'- --gGCGAccccauGGuuGAGaGCCCGGACAc- -3'
miRNA:   3'- aaaUGCU------CCggCUCaCGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 15931 0.8 0.181441
Target:  5'- ---cCGGGGCCGGG-GCCCGGGCAg- -3'
miRNA:   3'- aaauGCUCCGGCUCaCGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 15967 0.66 0.840415
Target:  5'- --gGCG-GGCgGGGgaggGCCCGGGCc-- -3'
miRNA:   3'- aaaUGCuCCGgCUCa---CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 16956 0.68 0.757602
Target:  5'- --aGCGAGGCCGGGcgGCCgccccgucugcggCGGACc-- -3'
miRNA:   3'- aaaUGCUCCGGCUCa-CGG-------------GCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 19359 0.69 0.677716
Target:  5'- --cGCGGuGGCCGAGgccaggGCCgCGGGCGc- -3'
miRNA:   3'- aaaUGCU-CCGGCUCa-----CGG-GCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 19722 0.66 0.831999
Target:  5'- ---uCGAGGCCGAG-GCCCcGAUc-- -3'
miRNA:   3'- aaauGCUCCGGCUCaCGGGcCUGuau -5'
23580 5' -56.4 NC_005261.1 + 22967 0.68 0.728859
Target:  5'- --gACGAGGCCGAGga-CCGGGa--- -3'
miRNA:   3'- aaaUGCUCCGGCUCacgGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 23232 0.69 0.698357
Target:  5'- --cGCGGGGCCGGG-GCCgCGG-CGg- -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGG-GCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 23481 0.66 0.856648
Target:  5'- --gGCGAGuGCgCGGGcccGCCUGGGCAg- -3'
miRNA:   3'- aaaUGCUC-CG-GCUCa--CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 24624 0.7 0.646485
Target:  5'- --aACuuGGCCagcGGGUGCCCGGGCGc- -3'
miRNA:   3'- aaaUGcuCCGG---CUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 26956 0.67 0.796524
Target:  5'- --gGCGcGGGCCGGGUGCUCGcucucagcGGCAg- -3'
miRNA:   3'- aaaUGC-UCCGGCUCACGGGC--------CUGUau -5'
23580 5' -56.4 NC_005261.1 + 27254 0.68 0.748774
Target:  5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3'
miRNA:   3'- aaauGCUCCGgCUCACGgGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 29299 0.66 0.840415
Target:  5'- --gGCGAGGCCug--GCCCGG-CAg- -3'
miRNA:   3'- aaaUGCUCCGGcucaCGGGCCuGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.