Results 41 - 60 of 91 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 56842 | 0.69 | 0.667332 |
Target: 5'- --gGgGAGGCCGGGaGCCCGG-CGc- -3' miRNA: 3'- aaaUgCUCCGGCUCaCGGGCCuGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 72051 | 0.68 | 0.748774 |
Target: 5'- ----gGAGGCgGAcGUGCCUGuGACGUAc -3' miRNA: 3'- aaaugCUCCGgCU-CACGGGC-CUGUAU- -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 15721 | 0.68 | 0.728859 |
Target: 5'- --gGCGAccccauGGuuGAGaGCCCGGACAc- -3' miRNA: 3'- aaaUGCU------CCggCUCaCGGGCCUGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 6023 | 0.68 | 0.728859 |
Target: 5'- --cGCGuGGCgCGGGcggGCCCGGACc-- -3' miRNA: 3'- aaaUGCuCCG-GCUCa--CGGGCCUGuau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 127485 | 0.68 | 0.728859 |
Target: 5'- --gACGAGGCCGAGga-CCGGGa--- -3' miRNA: 3'- aaaUGCUCCGGCUCacgGGCCUguau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 136073 | 0.68 | 0.718765 |
Target: 5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3' miRNA: 3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 51464 | 0.68 | 0.708595 |
Target: 5'- --gACGAGGaCGucacGUGCCUGGACGa- -3' miRNA: 3'- aaaUGCUCCgGCu---CACGGGCCUGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 31670 | 0.69 | 0.698357 |
Target: 5'- ---cCGGGGCCGGcgcgcgccgGCCCGGACGc- -3' miRNA: 3'- aaauGCUCCGGCUca-------CGGGCCUGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 30331 | 0.69 | 0.698357 |
Target: 5'- ---cCGAGGCCGcG-GCCgCGGACAa- -3' miRNA: 3'- aaauGCUCCGGCuCaCGG-GCCUGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 23232 | 0.69 | 0.698357 |
Target: 5'- --cGCGGGGCCGGG-GCCgCGG-CGg- -3' miRNA: 3'- aaaUGCUCCGGCUCaCGG-GCCuGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 90787 | 0.69 | 0.677716 |
Target: 5'- --aGCG-GGCCGGGcGCCuguCGGACGUGu -3' miRNA: 3'- aaaUGCuCCGGCUCaCGG---GCCUGUAU- -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 19359 | 0.69 | 0.677716 |
Target: 5'- --cGCGGuGGCCGAGgccaggGCCgCGGGCGc- -3' miRNA: 3'- aaaUGCU-CCGGCUCa-----CGG-GCCUGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 98116 | 0.66 | 0.840415 |
Target: 5'- --gGCGAGGCUGGGgacGCCgCGG-CAc- -3' miRNA: 3'- aaaUGCUCCGGCUCa--CGG-GCCuGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 113910 | 0.66 | 0.840415 |
Target: 5'- --cGCGAuGGCCGAG-GCagCGGGCGc- -3' miRNA: 3'- aaaUGCU-CCGGCUCaCGg-GCCUGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 129699 | 0.66 | 0.840415 |
Target: 5'- ---cCGGGGCCGGG-GCCgGaGGCAg- -3' miRNA: 3'- aaauGCUCCGGCUCaCGGgC-CUGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 30483 | 0.66 | 0.848634 |
Target: 5'- --gAgGAGGCCGGG-GCCuCGGAa--- -3' miRNA: 3'- aaaUgCUCCGGCUCaCGG-GCCUguau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 35305 | 0.66 | 0.848634 |
Target: 5'- --aGCGccGGGCCGGGcUGCUCGGGgAg- -3' miRNA: 3'- aaaUGC--UCCGGCUC-ACGGGCCUgUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 90398 | 0.66 | 0.856648 |
Target: 5'- --gGCGGGGCUG-GcGCCCGGcGCGg- -3' miRNA: 3'- aaaUGCUCCGGCuCaCGGGCC-UGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 105758 | 0.66 | 0.856648 |
Target: 5'- --cGCGGGGaCCuGGGUGCUCaGGGCGc- -3' miRNA: 3'- aaaUGCUCC-GG-CUCACGGG-CCUGUau -5' |
|||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 113962 | 1.04 | 0.003855 |
Target: 5'- uUUUACGAGGCCGAGUGCCCGGACAUAg -3' miRNA: 3'- -AAAUGCUCCGGCUCACGGGCCUGUAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home