miRNA display CGI


Results 21 - 40 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 87567 0.66 0.81409
Target:  5'- aCGGC-GCGGacuugGGCGAGCGCguucgCCGGCGc -3'
miRNA:   3'- aGUUGuCGCUg----UCGCUCGCG-----GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 54553 0.66 0.81409
Target:  5'- cUCGGCGGCGcGCuGC--GCGCCCaGGCGc -3'
miRNA:   3'- -AGUUGUCGC-UGuCGcuCGCGGG-CUGC- -5'
23582 3' -57.5 NC_005261.1 + 18737 0.66 0.822644
Target:  5'- gUUGGCgGGCGGCGGCGccGGCGUCCccaagGGCGu -3'
miRNA:   3'- -AGUUG-UCGCUGUCGC--UCGCGGG-----CUGC- -5'
23582 3' -57.5 NC_005261.1 + 76667 0.66 0.82349
Target:  5'- aUCAcCAGCGccaccaucagaucguCGGCG-GCGCCgCGGCGc -3'
miRNA:   3'- -AGUuGUCGCu--------------GUCGCuCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 73392 0.66 0.831027
Target:  5'- gUCAugGcGCuGCAGCGcGCGgaCCCGGCGc -3'
miRNA:   3'- -AGUugU-CGcUGUCGCuCGC--GGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 99684 0.66 0.822644
Target:  5'- gCAugGccgcGCGcCGGCGcuGUGCCCGGCGc -3'
miRNA:   3'- aGUugU----CGCuGUCGCu-CGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 3910 0.66 0.822644
Target:  5'- aCAGCAGCGAgaccagcucCAGCGcGGCGaaggCGGCGa -3'
miRNA:   3'- aGUUGUCGCU---------GUCGC-UCGCgg--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 85216 0.66 0.822644
Target:  5'- gCGGaAGCGcUGGCGAGCuGCgCCGACGc -3'
miRNA:   3'- aGUUgUCGCuGUCGCUCG-CG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 34762 0.66 0.822644
Target:  5'- cCAGCuggacgcccuGGCGACgGGCGcGGCGgCCGACc -3'
miRNA:   3'- aGUUG----------UCGCUG-UCGC-UCGCgGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 7142 0.66 0.822644
Target:  5'- --cGCGGCGACGGCGuacguggccaGGCaGuCCCGcACGg -3'
miRNA:   3'- aguUGUCGCUGUCGC----------UCG-C-GGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 73059 0.66 0.822644
Target:  5'- gUCAucCA-CGGCAGCGAGCGCaccuucugcgcgCUGGCGc -3'
miRNA:   3'- -AGUu-GUcGCUGUCGCUCGCG------------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 32896 0.66 0.822644
Target:  5'- aCGGCcGUGGCGGUGGGCGgCgCCGggGCGg -3'
miRNA:   3'- aGUUGuCGCUGUCGCUCGC-G-GGC--UGC- -5'
23582 3' -57.5 NC_005261.1 + 127850 0.66 0.831027
Target:  5'- cCGACgAGCGcGCGGCGcAGCGCgCG-CGu -3'
miRNA:   3'- aGUUG-UCGC-UGUCGC-UCGCGgGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 89400 0.66 0.831027
Target:  5'- -----cGCGGCGGCGGG-GCCgaCGACGg -3'
miRNA:   3'- aguuguCGCUGUCGCUCgCGG--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 72748 0.66 0.822644
Target:  5'- ----gAGCaGAUGGUG-GCGCCCGGCa -3'
miRNA:   3'- aguugUCG-CUGUCGCuCGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 41636 0.66 0.822644
Target:  5'- gCGACGuGCuGCGGCaGAGCGCCgccggggucaCGGCGg -3'
miRNA:   3'- aGUUGU-CGcUGUCG-CUCGCGG----------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 61082 0.66 0.81409
Target:  5'- -----cGCGGCGGCG-GCGCgaGACGg -3'
miRNA:   3'- aguuguCGCUGUCGCuCGCGggCUGC- -5'
23582 3' -57.5 NC_005261.1 + 100035 0.66 0.831027
Target:  5'- gCAGCAGC-ACGccGCGGcGCGCCCaGGCc -3'
miRNA:   3'- aGUUGUCGcUGU--CGCU-CGCGGG-CUGc -5'
23582 3' -57.5 NC_005261.1 + 88277 0.66 0.827695
Target:  5'- aCGACGGCGccgccuccuuuuuuGCGcggcuccGCGGGCGCCUcgaGGCGg -3'
miRNA:   3'- aGUUGUCGC--------------UGU-------CGCUCGCGGG---CUGC- -5'
23582 3' -57.5 NC_005261.1 + 109180 0.66 0.81409
Target:  5'- gUCGgccGCGGCGGCGGCG-GCcCCCGuguCa -3'
miRNA:   3'- -AGU---UGUCGCUGUCGCuCGcGGGCu--Gc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.