miRNA display CGI


Results 1 - 20 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 3910 0.66 0.822644
Target:  5'- aCAGCAGCGAgaccagcucCAGCGcGGCGaaggCGGCGa -3'
miRNA:   3'- aGUUGUCGCU---------GUCGC-UCGCgg--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 62070 0.66 0.821796
Target:  5'- aCuGCAGCGccACGGCGucguGCGCCgccacgaccuccaCGACGg -3'
miRNA:   3'- aGuUGUCGC--UGUCGCu---CGCGG-------------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 34762 0.66 0.822644
Target:  5'- cCAGCuggacgcccuGGCGACgGGCGcGGCGgCCGACc -3'
miRNA:   3'- aGUUG----------UCGCUG-UCGC-UCGCgGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 36342 0.66 0.822644
Target:  5'- -gAGgAGCGcgcGCGGCuGGGCGCCCuGCGc -3'
miRNA:   3'- agUUgUCGC---UGUCG-CUCGCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 32896 0.66 0.822644
Target:  5'- aCGGCcGUGGCGGUGGGCGgCgCCGggGCGg -3'
miRNA:   3'- aGUUGuCGCUGUCGCUCGC-G-GGC--UGC- -5'
23582 3' -57.5 NC_005261.1 + 54553 0.66 0.81409
Target:  5'- cUCGGCGGCGcGCuGC--GCGCCCaGGCGc -3'
miRNA:   3'- -AGUUGUCGC-UGuCGcuCGCGGG-CUGC- -5'
23582 3' -57.5 NC_005261.1 + 25257 0.66 0.822644
Target:  5'- -aGAUGGCGGCGGUG-GCGgCCGcCGu -3'
miRNA:   3'- agUUGUCGCUGUCGCuCGCgGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 122432 0.66 0.820095
Target:  5'- ----gGGUGGCGGCGcuggccgcgcgggcGGCGCCCGccaGCGg -3'
miRNA:   3'- aguugUCGCUGUCGC--------------UCGCGGGC---UGC- -5'
23582 3' -57.5 NC_005261.1 + 18737 0.66 0.822644
Target:  5'- gUUGGCgGGCGGCGGCGccGGCGUCCccaagGGCGu -3'
miRNA:   3'- -AGUUG-UCGCUGUCGC--UCGCGGG-----CUGC- -5'
23582 3' -57.5 NC_005261.1 + 87567 0.66 0.81409
Target:  5'- aCGGC-GCGGacuugGGCGAGCGCguucgCCGGCGc -3'
miRNA:   3'- aGUUGuCGCUg----UCGCUCGCG-----GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 4890 0.66 0.81409
Target:  5'- gCGGCAGCGcCGcGCGcGCGUgCCGGCa -3'
miRNA:   3'- aGUUGUCGCuGU-CGCuCGCG-GGCUGc -5'
23582 3' -57.5 NC_005261.1 + 73182 0.66 0.81409
Target:  5'- aUCAAC-GCGuaccuggggaACGGUGAGuUGCCCGAgGa -3'
miRNA:   3'- -AGUUGuCGC----------UGUCGCUC-GCGGGCUgC- -5'
23582 3' -57.5 NC_005261.1 + 35670 0.66 0.822644
Target:  5'- -gGACGGCGagGCGGUGucCGCCgGGCGc -3'
miRNA:   3'- agUUGUCGC--UGUCGCucGCGGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 14173 0.66 0.817532
Target:  5'- gUCGGCcgagcuguaccugcuGGCGcUAGCGcacucagaGGCGCCCGGCu -3'
miRNA:   3'- -AGUUG---------------UCGCuGUCGC--------UCGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 61082 0.66 0.81409
Target:  5'- -----cGCGGCGGCG-GCGCgaGACGg -3'
miRNA:   3'- aguuguCGCUGUCGCuCGCGggCUGC- -5'
23582 3' -57.5 NC_005261.1 + 84786 0.66 0.81409
Target:  5'- ---cCGGCGACcuccCGA-CGCCCGACGg -3'
miRNA:   3'- aguuGUCGCUGuc--GCUcGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 118007 0.66 0.813226
Target:  5'- -gAGCGGCuggccaGGCAGCGGGCGCggggccuUUGGCGg -3'
miRNA:   3'- agUUGUCG------CUGUCGCUCGCG-------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 41636 0.66 0.822644
Target:  5'- gCGACGuGCuGCGGCaGAGCGCCgccggggucaCGGCGg -3'
miRNA:   3'- aGUUGU-CGcUGUCG-CUCGCGG----------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 109180 0.66 0.81409
Target:  5'- gUCGgccGCGGCGGCGGCG-GCcCCCGuguCa -3'
miRNA:   3'- -AGU---UGUCGCUGUCGCuCGcGGGCu--Gc -5'
23582 3' -57.5 NC_005261.1 + 73059 0.66 0.822644
Target:  5'- gUCAucCA-CGGCAGCGAGCGCaccuucugcgcgCUGGCGc -3'
miRNA:   3'- -AGUu-GUcGCUGUCGCUCGCG------------GGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.