miRNA display CGI


Results 1 - 20 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 35537 0.77 0.274579
Target:  5'- -aGACGGCGGCAGCGAcgGCCgCGGCGg -3'
miRNA:   3'- agUUGUCGCUGUCGCUcgCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 106901 0.78 0.23248
Target:  5'- gCAGCGGCGcgcugGCGGCGAGCGCgCCcGCGg -3'
miRNA:   3'- aGUUGUCGC-----UGUCGCUCGCG-GGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 110030 0.78 0.243923
Target:  5'- gCGGCAGCGGCGGCGAGgcCGCCggcuuCGGCGc -3'
miRNA:   3'- aGUUGUCGCUGUCGCUC--GCGG-----GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 115415 0.78 0.243923
Target:  5'- cCAACGGCGGCGGCGgcAGCGCCgccgccggccgCGACa -3'
miRNA:   3'- aGUUGUCGCUGUCGC--UCGCGG-----------GCUGc -5'
23582 3' -57.5 NC_005261.1 + 13017 0.78 0.243923
Target:  5'- aUCGACGGCGauaGCAGCGAcaGCGC-CGACGa -3'
miRNA:   3'- -AGUUGUCGC---UGUCGCU--CGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 82255 0.78 0.243923
Target:  5'- cCGAUGGCGACGGCG-GCGCUCG-CGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 78878 0.78 0.249818
Target:  5'- gCGACacccucguGGCGACGGCG-GCGaCCCGGCGg -3'
miRNA:   3'- aGUUG--------UCGCUGUCGCuCGC-GGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 108978 0.77 0.261961
Target:  5'- cCAGCGGCGGCGGCccgucgcgcGGCGCCgCGGCGu -3'
miRNA:   3'- aGUUGUCGCUGUCGc--------UCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 126021 0.77 0.274579
Target:  5'- gCAGCAGCGGCGGCG-GCa-CCGGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGcgGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 31975 0.78 0.23248
Target:  5'- gCGGCAGCGGCGGCG-GCGgCCCGGu- -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGC-GGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 31863 0.79 0.216166
Target:  5'- gCAACGGCGACGGCG-GCGUCagcgCGGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGCGG----GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 42490 0.79 0.200843
Target:  5'- cCGGCGGCGGCGGCG-GCGCCgcugagcgCGGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGCGG--------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 85893 0.83 0.121085
Target:  5'- gCGGCAGCG-CGGCGGGCGCCaagGACGg -3'
miRNA:   3'- aGUUGUCGCuGUCGCUCGCGGg--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 33055 0.81 0.148682
Target:  5'- --cGCGGCGGCGGCGGGC-CCCGugGa -3'
miRNA:   3'- aguUGUCGCUGUCGCUCGcGGGCugC- -5'
23582 3' -57.5 NC_005261.1 + 38144 0.81 0.152509
Target:  5'- gCAGCGGCGGCGGCGAggggcgcggcGCGCCCccgGGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCU----------CGCGGG---CUGC- -5'
23582 3' -57.5 NC_005261.1 + 43623 0.81 0.160433
Target:  5'- gCGGCGGCGAgGGCGcGCGCUCGugGg -3'
miRNA:   3'- aGUUGUCGCUgUCGCuCGCGGGCugC- -5'
23582 3' -57.5 NC_005261.1 + 121911 0.8 0.181888
Target:  5'- cCGGCGGCGAgGGgGAGgGCCCGGCc -3'
miRNA:   3'- aGUUGUCGCUgUCgCUCgCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 34248 0.8 0.186473
Target:  5'- aCcGCGGCGGCGGCGAGCGCUuccgugUGGCGg -3'
miRNA:   3'- aGuUGUCGCUGUCGCUCGCGG------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 46045 0.79 0.200843
Target:  5'- gCGcCAGCGGCGGCGucGgGCCCGGCGg -3'
miRNA:   3'- aGUuGUCGCUGUCGCu-CgCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 55544 0.79 0.200843
Target:  5'- -gAGC-GCGGCGGUG-GCGCCCGACGa -3'
miRNA:   3'- agUUGuCGCUGUCGCuCGCGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.