miRNA display CGI

Results 1 - 20 of 794 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23582	3'	-57.5	NC_005261.1	+	257	0.69	0.701204
	Target:  5'- gCGGCGGCGGCuGCGgcGGCgGCUgCGGCGg -3' miRNA:   3'- aGUUGUCGCUGuCGC--UCG-CGG-GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	293	0.69	0.701204
	Target:  5'- gCGGCGGCGGCuGCGgcGGCgGCUgCGGCGg -3' miRNA:   3'- aGUUGUCGCUGuCGC--UCG-CGG-GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	329	0.75	0.352683
	Target:  5'- gCGGCGGCGGCuGCGGcggcccGCaGCCCGGCGc -3' miRNA:   3'- aGUUGUCGCUGuCGCU------CG-CGGGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	393	0.73	0.463513
	Target:  5'- gCGGCGGCGGCGGCGgcAGCGguccuggucCCgCGACGg -3' miRNA:   3'- aGUUGUCGCUGUCGC--UCGC---------GG-GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	435	0.69	0.701204
	Target:  5'- -gGGCGGCGccggcgcggGCGGCGGG-GCCCGGgGg -3' miRNA:   3'- agUUGUCGC---------UGUCGCUCgCGGGCUgC- -5'
23582	3'	-57.5	NC_005261.1	+	607	0.74	0.418659
	Target:  5'- -----cGCGGagGGCGAGUGCCCGACGc -3' miRNA:   3'- aguuguCGCUg-UCGCUCGCGGGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	638	0.66	0.838419
	Target:  5'- -uGGCGGCGGCcGCcAGCGCcgcguccCCGGCGc -3' miRNA:   3'- agUUGUCGCUGuCGcUCGCG-------GGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	1307	0.66	0.84725
	Target:  5'- gUCGcCGGCGGCGGCacGCGCUCcggGACGc -3' miRNA:   3'- -AGUuGUCGCUGUCGcuCGCGGG---CUGC- -5'
23582	3'	-57.5	NC_005261.1	+	1415	0.76	0.308244
	Target:  5'- gCGGCGGCGGgGGCG-GCGCCCGcCu -3' miRNA:   3'- aGUUGUCGCUgUCGCuCGCGGGCuGc -5'
23582	3'	-57.5	NC_005261.1	+	1443	0.71	0.540046
	Target:  5'- gCAcCAGCGGCGGCGccucGGCGUgCGGCu -3' miRNA:   3'- aGUuGUCGCUGUCGC----UCGCGgGCUGc -5'
23582	3'	-57.5	NC_005261.1	+	1491	0.68	0.740513
	Target:  5'- cCGACGGCuugcaGCAGCGggacuugcAGUGCCuCGACGu -3' miRNA:   3'- aGUUGUCGc----UGUCGC--------UCGCGG-GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	1560	0.66	0.839231
	Target:  5'- aCAcCGGCcGCAGCG-GCGCgCCGAg- -3' miRNA:   3'- aGUuGUCGcUGUCGCuCGCG-GGCUgc -5'
23582	3'	-57.5	NC_005261.1	+	1889	0.66	0.850405
	Target:  5'- aCGGCGcGCGcCAGCGcgcgccgcucaggccAGCGCgCGGCGc -3' miRNA:   3'- aGUUGU-CGCuGUCGC---------------UCGCGgGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	2222	0.68	0.75013
	Target:  5'- gCAGguGCGAgAGCccgccGCGCaCCGGCGg -3' miRNA:   3'- aGUUguCGCUgUCGcu---CGCG-GGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	2384	0.78	0.23248
	Target:  5'- gCAGCGGCGcgcugGCGGCGAGCGCgCCcGCGg -3' miRNA:   3'- aGUUGUCGC-----UGUCGCUCGCG-GGcUGC- -5'
23582	3'	-57.5	NC_005261.1	+	2442	0.72	0.520449
	Target:  5'- cUCGGcCAGCGcCucggggucgaaGGCGAGCGCCgGGCGc -3' miRNA:   3'- -AGUU-GUCGCuG-----------UCGCUCGCGGgCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	2454	0.73	0.445262
	Target:  5'- cCGACAGCGGCAcGCGcucuGCGCCgGAgCGc -3' miRNA:   3'- aGUUGUCGCUGU-CGCu---CGCGGgCU-GC- -5'
23582	3'	-57.5	NC_005261.1	+	2532	0.68	0.759645
	Target:  5'- gCGGCAGUaGGCcGCcAGCGCCgCGGCGc -3' miRNA:   3'- aGUUGUCG-CUGuCGcUCGCGG-GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	2595	0.68	0.740513
	Target:  5'- gCGGCGGaagccgccguCGGCGGCGGGgcCGCCgGGCGg -3' miRNA:   3'- aGUUGUC----------GCUGUCGCUC--GCGGgCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	2657	0.69	0.68117
	Target:  5'- gCAGCGGCGGCucccgccGCGcuGGgGaCCCGGCGg -3' miRNA:   3'- aGUUGUCGCUGu------CGC--UCgC-GGGCUGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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