Results 21 - 40 of 794 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 106901 | 0.78 | 0.23248 |
Target: 5'- gCAGCGGCGcgcugGCGGCGAGCGCgCCcGCGg -3' miRNA: 3'- aGUUGUCGC-----UGUCGCUCGCG-GGcUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 64878 | 0.78 | 0.23248 |
Target: 5'- aUCAGCGGCGGCGG-GAGCGCCgGGu- -3' miRNA: 3'- -AGUUGUCGCUGUCgCUCGCGGgCUgc -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 31975 | 0.78 | 0.23248 |
Target: 5'- gCGGCAGCGGCGGCG-GCGgCCCGGu- -3' miRNA: 3'- aGUUGUCGCUGUCGCuCGC-GGGCUgc -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 10898 | 0.78 | 0.243923 |
Target: 5'- cCAACGGCGGCGGCGgcAGCGCCgccgccggccgCGACa -3' miRNA: 3'- aGUUGUCGCUGUCGC--UCGCGG-----------GCUGc -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 93563 | 0.78 | 0.243923 |
Target: 5'- gUCGACGGCGguGCGGCGGgacgcgaucgcGCGCUCGGCGa -3' miRNA: 3'- -AGUUGUCGC--UGUCGCU-----------CGCGGGCUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 5513 | 0.78 | 0.243923 |
Target: 5'- gCGGCAGCGGCGGCGAGgcCGCCggcuuCGGCGc -3' miRNA: 3'- aGUUGUCGCUGUCGCUC--GCGG-----GCUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 13017 | 0.78 | 0.243923 |
Target: 5'- aUCGACGGCGauaGCAGCGAcaGCGC-CGACGa -3' miRNA: 3'- -AGUUGUCGC---UGUCGCU--CGCGgGCUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 110030 | 0.78 | 0.243923 |
Target: 5'- gCGGCAGCGGCGGCGAGgcCGCCggcuuCGGCGc -3' miRNA: 3'- aGUUGUCGCUGUCGCUC--GCGG-----GCUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 115415 | 0.78 | 0.243923 |
Target: 5'- cCAACGGCGGCGGCGgcAGCGCCgccgccggccgCGACa -3' miRNA: 3'- aGUUGUCGCUGUCGC--UCGCGG-----------GCUGc -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 82255 | 0.78 | 0.243923 |
Target: 5'- cCGAUGGCGACGGCG-GCGCUCG-CGg -3' miRNA: 3'- aGUUGUCGCUGUCGCuCGCGGGCuGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 78878 | 0.78 | 0.249818 |
Target: 5'- gCGACacccucguGGCGACGGCG-GCGaCCCGGCGg -3' miRNA: 3'- aGUUG--------UCGCUGUCGCuCGC-GGGCUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 68707 | 0.77 | 0.254015 |
Target: 5'- aCGACGGCGGCgccggcccucacgcGGCGGGCGCC-GGCGg -3' miRNA: 3'- aGUUGUCGCUG--------------UCGCUCGCGGgCUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 102953 | 0.77 | 0.255831 |
Target: 5'- gCGGCGGCGGCcGCGGGCGCCgCGGg- -3' miRNA: 3'- aGUUGUCGCUGuCGCUCGCGG-GCUgc -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 4461 | 0.77 | 0.261961 |
Target: 5'- cCAGCGGCGGCGGCccgucgcgcGGCGCCgCGGCGu -3' miRNA: 3'- aGUUGUCGCUGUCGc--------UCGCGG-GCUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 108978 | 0.77 | 0.261961 |
Target: 5'- cCAGCGGCGGCGGCccgucgcgcGGCGCCgCGGCGu -3' miRNA: 3'- aGUUGUCGCUGUCGc--------UCGCGG-GCUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 49204 | 0.77 | 0.273937 |
Target: 5'- cCGACAGCGAgGGCGggaggccGGCGCCCaGCGc -3' miRNA: 3'- aGUUGUCGCUgUCGC-------UCGCGGGcUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 126021 | 0.77 | 0.274579 |
Target: 5'- gCAGCAGCGGCGGCG-GCa-CCGGCGg -3' miRNA: 3'- aGUUGUCGCUGUCGCuCGcgGGCUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 126934 | 0.77 | 0.274579 |
Target: 5'- cCAGCAGCG-CGGCcagGGGCGCCgGGCGc -3' miRNA: 3'- aGUUGUCGCuGUCG---CUCGCGGgCUGC- -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 129732 | 0.77 | 0.274579 |
Target: 5'- gCAGCGGCagGGCGGCGGG-GCCCGGCc -3' miRNA: 3'- aGUUGUCG--CUGUCGCUCgCGGGCUGc -5' |
|||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 35537 | 0.77 | 0.274579 |
Target: 5'- -aGACGGCGGCAGCGAcgGCCgCGGCGg -3' miRNA: 3'- agUUGUCGCUGUCGCUcgCGG-GCUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home