miRNA display CGI


Results 41 - 60 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 1307 0.66 0.84725
Target:  5'- gUCGcCGGCGGCGGCacGCGCUCcggGACGc -3'
miRNA:   3'- -AGUuGUCGCUGUCGcuCGCGGG---CUGC- -5'
23582 3' -57.5 NC_005261.1 + 135454 0.66 0.84725
Target:  5'- gCGGCAGCcccucGGgGGCGGGCcucgaggcccGCCgCGACGg -3'
miRNA:   3'- aGUUGUCG-----CUgUCGCUCG----------CGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 28735 0.66 0.84725
Target:  5'- --cGCGGCGGgcGCGGGC-CCCGGCc -3'
miRNA:   3'- aguUGUCGCUguCGCUCGcGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 60334 0.66 0.84725
Target:  5'- aCGACGGUGuuuGCG-GCGCCgCGGCc -3'
miRNA:   3'- aGUUGUCGCuguCGCuCGCGG-GCUGc -5'
23582 3' -57.5 NC_005261.1 + 14695 0.66 0.84725
Target:  5'- aUggUGGCGAgGGgGGGCGCCuuCGGCc -3'
miRNA:   3'- aGuuGUCGCUgUCgCUCGCGG--GCUGc -5'
23582 3' -57.5 NC_005261.1 + 31900 0.66 0.84725
Target:  5'- -gGAC-GCGGCGGCGGG-GCCguggcucaCGACGg -3'
miRNA:   3'- agUUGuCGCUGUCGCUCgCGG--------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 58073 0.66 0.84725
Target:  5'- --cGCGGaCGGCGGCGccAGgGCCCG-CGu -3'
miRNA:   3'- aguUGUC-GCUGUCGC--UCgCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 35780 0.66 0.84725
Target:  5'- -aGACAGgaGGCccGCGGGCGCCaUGGCGc -3'
miRNA:   3'- agUUGUCg-CUGu-CGCUCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 16431 0.66 0.84725
Target:  5'- cUCGACGGCgGGCGGCG-GCucguaGCCCuuCGa -3'
miRNA:   3'- -AGUUGUCG-CUGUCGCuCG-----CGGGcuGC- -5'
23582 3' -57.5 NC_005261.1 + 104192 0.66 0.84725
Target:  5'- -aGGCAG-GGCAGCGcGCGCgCCG-CGc -3'
miRNA:   3'- agUUGUCgCUGUCGCuCGCG-GGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 103609 0.66 0.84725
Target:  5'- --cGCGGCGGCAGCGcgggaGGCGgC-GGCGg -3'
miRNA:   3'- aguUGUCGCUGUCGC-----UCGCgGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 54781 0.66 0.84725
Target:  5'- gCGACAG-GACGGCGcGC-CCCGcCGc -3'
miRNA:   3'- aGUUGUCgCUGUCGCuCGcGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 72571 0.66 0.84725
Target:  5'- gCGGCGcugcGCGcCGGCGcGCGCCagaGGCGa -3'
miRNA:   3'- aGUUGU----CGCuGUCGCuCGCGGg--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 30412 0.66 0.84725
Target:  5'- -aGGCGGCGGCGGCcgcuaGGGCcGCCgCGcGCGa -3'
miRNA:   3'- agUUGUCGCUGUCG-----CUCG-CGG-GC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 5332 0.66 0.84725
Target:  5'- cUCGGCGcCGcCcGCG-GCGCCCGGCu -3'
miRNA:   3'- -AGUUGUcGCuGuCGCuCGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 105824 0.66 0.84725
Target:  5'- gUCGcCGGCGGCGGCacGCGCUCcggGACGc -3'
miRNA:   3'- -AGUuGUCGCUGUCGcuCGCGGG---CUGC- -5'
23582 3' -57.5 NC_005261.1 + 45648 0.66 0.84725
Target:  5'- gCGGCuGCGcucGCGcGUGGGCGCgCGGCGc -3'
miRNA:   3'- aGUUGuCGC---UGU-CGCUCGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 15368 0.66 0.84725
Target:  5'- cCGGCGGCGcuCGGCGcccucGGCGCcgccgucgaugCCGACGc -3'
miRNA:   3'- aGUUGUCGCu-GUCGC-----UCGCG-----------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 79060 0.66 0.846457
Target:  5'- -gAGCAGuCGGCgggcuggGGCGGGCGCCgCG-CGc -3'
miRNA:   3'- agUUGUC-GCUG-------UCGCUCGCGG-GCuGC- -5'
23582 3' -57.5 NC_005261.1 + 35893 0.66 0.846457
Target:  5'- uUCGACGcggccgagcuggcGCGGCuGCGcgccGCGCCgCGGCGc -3'
miRNA:   3'- -AGUUGU-------------CGCUGuCGCu---CGCGG-GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.