miRNA display CGI


Results 21 - 40 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 2998 0.69 0.691211
Target:  5'- gCAA-AGaCGGCGGCGAcGCGCUCGGCc -3'
miRNA:   3'- aGUUgUC-GCUGUCGCU-CGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 3042 0.68 0.729827
Target:  5'- cUCGGCcaugcuccgcgcgAGCcGCAGCGAGCuCCCGAuCGa -3'
miRNA:   3'- -AGUUG-------------UCGcUGUCGCUCGcGGGCU-GC- -5'
23582 3' -57.5 NC_005261.1 + 3549 0.67 0.805374
Target:  5'- --cGCAGCG-CGGCGGGCGC--GGCGc -3'
miRNA:   3'- aguUGUCGCuGUCGCUCGCGggCUGC- -5'
23582 3' -57.5 NC_005261.1 + 3850 0.74 0.376544
Target:  5'- gCAGCGGCGcCGGCGccgcGCGgCCGGCGa -3'
miRNA:   3'- aGUUGUCGCuGUCGCu---CGCgGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 3893 0.75 0.344971
Target:  5'- cUCGGCGagcGCGGC-GCGGGCGCCCG-CGc -3'
miRNA:   3'- -AGUUGU---CGCUGuCGCUCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 3910 0.66 0.822644
Target:  5'- aCAGCAGCGAgaccagcucCAGCGcGGCGaaggCGGCGa -3'
miRNA:   3'- aGUUGUCGCU---------GUCGC-UCGCgg--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 4079 0.7 0.639677
Target:  5'- cCGAcCGGCGGCAGCG-GCGCCgucacgcucccggUGAUGa -3'
miRNA:   3'- aGUU-GUCGCUGUCGCuCGCGG-------------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 4118 0.74 0.418659
Target:  5'- -aGGCGGaaguCGGCGGCGAGCGCgcgCCGGCGc -3'
miRNA:   3'- agUUGUC----GCUGUCGCUCGCG---GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 4402 0.72 0.4916
Target:  5'- -gGGCGGCGGCGGCGcGCuGCCgGGCc -3'
miRNA:   3'- agUUGUCGCUGUCGCuCG-CGGgCUGc -5'
23582 3' -57.5 NC_005261.1 + 4461 0.77 0.261961
Target:  5'- cCAGCGGCGGCGGCccgucgcgcGGCGCCgCGGCGu -3'
miRNA:   3'- aGUUGUCGCUGUCGc--------UCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 4599 0.73 0.472784
Target:  5'- gCAGCGGCG-CGGCGAGCGCggCCcACa -3'
miRNA:   3'- aGUUGUCGCuGUCGCUCGCG--GGcUGc -5'
23582 3' -57.5 NC_005261.1 + 4663 0.66 0.81409
Target:  5'- gUCGgccGCGGCGGCGGCG-GCcCCCGuguCa -3'
miRNA:   3'- -AGU---UGUCGCUGUCGCuCGcGGGCu--Gc -5'
23582 3' -57.5 NC_005261.1 + 4822 0.66 0.85275
Target:  5'- aCAcCAGCGAgCGGgccuuguuuugggcCGcGCGCCCGugGg -3'
miRNA:   3'- aGUuGUCGCU-GUC--------------GCuCGCGGGCugC- -5'
23582 3' -57.5 NC_005261.1 + 4834 0.66 0.838419
Target:  5'- --cGCAgGCGGCGGCGuccGCGCCgcagccucaagggCGGCGg -3'
miRNA:   3'- aguUGU-CGCUGUCGCu--CGCGG-------------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 4890 0.66 0.81409
Target:  5'- gCGGCAGCGcCGcGCGcGCGUgCCGGCa -3'
miRNA:   3'- aGUUGUCGCuGU-CGCuCGCG-GGCUGc -5'
23582 3' -57.5 NC_005261.1 + 4909 0.76 0.304043
Target:  5'- uUCGGCGGCGgcugccuccgccgcgGCcGCGAGCGCCCGcgccGCGg -3'
miRNA:   3'- -AGUUGUCGC---------------UGuCGCUCGCGGGC----UGC- -5'
23582 3' -57.5 NC_005261.1 + 4930 0.67 0.787487
Target:  5'- gCAGCcagucguccuuGGCGGCcacgaGGCGGGCG-CCGGCGc -3'
miRNA:   3'- aGUUG-----------UCGCUG-----UCGCUCGCgGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 5029 0.69 0.657939
Target:  5'- cUCGACGGCGuCGGCGAugaacuccucgacgGCGCCgCGGu- -3'
miRNA:   3'- -AGUUGUCGCuGUCGCU--------------CGCGG-GCUgc -5'
23582 3' -57.5 NC_005261.1 + 5071 0.72 0.4916
Target:  5'- gUCGGCGGCGACgccgacggcGGCGAGCGCgcaCCG-Ca -3'
miRNA:   3'- -AGUUGUCGCUG---------UCGCUCGCG---GGCuGc -5'
23582 3' -57.5 NC_005261.1 + 5193 0.68 0.75013
Target:  5'- gCAGCAcguGCGugcGCGGUGGcGCGCCCG-CGg -3'
miRNA:   3'- aGUUGU---CGC---UGUCGCU-CGCGGGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.