miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 3974 0.66 0.805969
Target:  5'- gUACAUCGgguacgcGGCCCgcagGGCGCgUGCGccACGc -3'
miRNA:   3'- -AUGUAGC-------UCGGGa---CCGUG-ACGC--UGCa -5'
23582 5' -57.6 NC_005261.1 + 6135 0.66 0.797876
Target:  5'- cGCGUCGcggccGCCCUccgcGGCAgCgGCGACGg -3'
miRNA:   3'- aUGUAGCu----CGGGA----CCGU-GaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 88908 0.66 0.788739
Target:  5'- cGCGUCGAGUUCcGGCucgaggGCUGCG-CGg -3'
miRNA:   3'- aUGUAGCUCGGGaCCG------UGACGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 101265 0.66 0.80686
Target:  5'- cGCAcCGAGCUCUGcGcCGC-GCGGCGg -3'
miRNA:   3'- aUGUaGCUCGGGAC-C-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 7989 0.66 0.815684
Target:  5'- ----aCGAGCCgCUGGCGCgGCGccugaGCGg -3'
miRNA:   3'- auguaGCUCGG-GACCGUGaCGC-----UGCa -5'
23582 5' -57.6 NC_005261.1 + 90416 0.66 0.815684
Target:  5'- gUACGU-GAGCgCCcuggUGGCGCUGCGcGCGc -3'
miRNA:   3'- -AUGUAgCUCG-GG----ACCGUGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 46595 0.66 0.815684
Target:  5'- gACA-CG-GCCCcgGGCACUGCGucccCGa -3'
miRNA:   3'- aUGUaGCuCGGGa-CCGUGACGCu---GCa -5'
23582 5' -57.6 NC_005261.1 + 135012 0.66 0.80686
Target:  5'- cGCggCGGGCCCgcacgcGGcCGCgGCGGCGa -3'
miRNA:   3'- aUGuaGCUCGGGa-----CC-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 17178 0.66 0.80686
Target:  5'- gGCGUgGgcAGCCCUGcCGCgGCGGCGa -3'
miRNA:   3'- aUGUAgC--UCGGGACcGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 127794 0.66 0.797876
Target:  5'- aGCggCGGGCC--GGCGCcGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGgaCCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 27546 0.66 0.80686
Target:  5'- gGCG-CGgaAGCCCUcgugcuccaGGCGCUGCG-CGUa -3'
miRNA:   3'- aUGUaGC--UCGGGA---------CCGUGACGCuGCA- -5'
23582 5' -57.6 NC_005261.1 + 60178 0.67 0.770992
Target:  5'- cGCGggggcCGGGCCCgcgaccaccggcuggGGCGgaGCGGCGUa -3'
miRNA:   3'- aUGUa----GCUCGGGa--------------CCGUgaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 54737 0.67 0.770045
Target:  5'- gGCG-CGcGCgCCUGGCGCUcuacgGCGGCGa -3'
miRNA:   3'- aUGUaGCuCG-GGACCGUGA-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 60710 0.67 0.750852
Target:  5'- gGCAUCGGGggCgggGGCGCgGCGGCGa -3'
miRNA:   3'- aUGUAGCUCggGa--CCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 42423 0.67 0.731234
Target:  5'- gACcgCGAGCCCccgccGGCGC-GCGGCu- -3'
miRNA:   3'- aUGuaGCUCGGGa----CCGUGaCGCUGca -5'
23582 5' -57.6 NC_005261.1 + 10785 0.67 0.728259
Target:  5'- gUGCAaCGAGCgCCUGGaccgaaugcugaaguCUGCGGCGa -3'
miRNA:   3'- -AUGUaGCUCG-GGACCgu-------------GACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 33801 0.67 0.72129
Target:  5'- gACG-CGGGCCCgcucaaGCugUGCGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGac----CGugACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 28049 0.67 0.72129
Target:  5'- aACGUCGcggaacugccGCCCggggGGCGCggugGCGGCGg -3'
miRNA:   3'- aUGUAGCu---------CGGGa---CCGUGa---CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 73232 0.67 0.72129
Target:  5'- cUACAaggaccuccUgGAGCaCCUGcacGCGCUGCGGCGg -3'
miRNA:   3'- -AUGU---------AgCUCG-GGAC---CGUGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 12892 0.67 0.760506
Target:  5'- cUGC-UgGAcGCCCUGcGCGCUGCgGACGc -3'
miRNA:   3'- -AUGuAgCU-CGGGAC-CGUGACG-CUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.