Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 5' | -57.6 | NC_005261.1 | + | 29123 | 0.68 | 0.711268 |
Target: 5'- -----gGAGCCCUGGCGCcggGgGGCGc -3' miRNA: 3'- auguagCUCGGGACCGUGa--CgCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 29892 | 0.69 | 0.623209 |
Target: 5'- gGCggCG-GCCCUGGCGCgggucgcggagcacGCGGCGg -3' miRNA: 3'- aUGuaGCuCGGGACCGUGa-------------CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 30064 | 0.7 | 0.578009 |
Target: 5'- gGCcgCGcGCCCUGGCggacgcGCUGCaGGCGg -3' miRNA: 3'- aUGuaGCuCGGGACCG------UGACG-CUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 30408 | 0.67 | 0.760506 |
Target: 5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3' miRNA: 3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 31245 | 0.7 | 0.56782 |
Target: 5'- ----cCGAGCCCUGGCGCc-CGGCGc -3' miRNA: 3'- auguaGCUCGGGACCGUGacGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 33801 | 0.67 | 0.72129 |
Target: 5'- gACG-CGGGCCCgcucaaGCugUGCGGCGc -3' miRNA: 3'- aUGUaGCUCGGGac----CGugACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 33835 | 0.72 | 0.478893 |
Target: 5'- gGCG-CGGGCCCccUGGCGCUG-GGCGg -3' miRNA: 3'- aUGUaGCUCGGG--ACCGUGACgCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 34174 | 0.73 | 0.42355 |
Target: 5'- cGCGcUCGcGGCCgaGGCGCUGCGGCa- -3' miRNA: 3'- aUGU-AGC-UCGGgaCCGUGACGCUGca -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 36995 | 0.68 | 0.710262 |
Target: 5'- cUGCG-CGAGCUgaGGCgccaccucgacgcGCUGCGGCGg -3' miRNA: 3'- -AUGUaGCUCGGgaCCG-------------UGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 42423 | 0.67 | 0.731234 |
Target: 5'- gACcgCGAGCCCccgccGGCGC-GCGGCu- -3' miRNA: 3'- aUGuaGCUCGGGa----CCGUGaCGCUGca -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 46595 | 0.66 | 0.815684 |
Target: 5'- gACA-CG-GCCCcgGGCACUGCGucccCGa -3' miRNA: 3'- aUGUaGCuCGGGa-CCGUGACGCu---GCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 46784 | 0.67 | 0.731234 |
Target: 5'- gGC-UUGAGCCCcgGGCGCccgucGCGGCGc -3' miRNA: 3'- aUGuAGCUCGGGa-CCGUGa----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 48318 | 0.77 | 0.227689 |
Target: 5'- cGCGUCGGGCCCgggcucgggGGCGCgcGCGGCGa -3' miRNA: 3'- aUGUAGCUCGGGa--------CCGUGa-CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 48915 | 0.66 | 0.815684 |
Target: 5'- aGCG-CGAGCCCgGGCGCcaGCGcCGc -3' miRNA: 3'- aUGUaGCUCGGGaCCGUGa-CGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 49581 | 0.67 | 0.770045 |
Target: 5'- aACA-CGGGCUCggGGCGC-GCGGCGc -3' miRNA: 3'- aUGUaGCUCGGGa-CCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 51142 | 0.67 | 0.770045 |
Target: 5'- gGCG-CGAaaGCCCccggGGCcCUGCGGCGg -3' miRNA: 3'- aUGUaGCU--CGGGa---CCGuGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 51160 | 0.68 | 0.670589 |
Target: 5'- cUACGUgcUGGGCCCggccgcggUGGCGCUGCG-UGUg -3' miRNA: 3'- -AUGUA--GCUCGGG--------ACCGUGACGCuGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 51783 | 0.66 | 0.787817 |
Target: 5'- gGCGUCGcccugcuGGCCgUGGCcaugcucguGCUGCGGCu- -3' miRNA: 3'- aUGUAGC-------UCGGgACCG---------UGACGCUGca -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 54254 | 0.69 | 0.650022 |
Target: 5'- gUGCAgCGcGCCCUGGCGCcGCGcACa- -3' miRNA: 3'- -AUGUaGCuCGGGACCGUGaCGC-UGca -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 54737 | 0.67 | 0.770045 |
Target: 5'- gGCG-CGcGCgCCUGGCGCUcuacgGCGGCGa -3' miRNA: 3'- aUGUaGCuCG-GGACCGUGA-----CGCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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