miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 240 0.69 0.598497
Target:  5'- cGCGagCGGGCCCggcugcGGCggcgGCUGCGGCGg -3'
miRNA:   3'- aUGUa-GCUCGGGa-----CCG----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 3557 0.71 0.517689
Target:  5'- -uCGUCGGGUCCUGGCGgCUG-GugGUu -3'
miRNA:   3'- auGUAGCUCGGGACCGU-GACgCugCA- -5'
23582 5' -57.6 NC_005261.1 + 3826 0.76 0.276274
Target:  5'- cUGCcgCGGGCCCgGGCGCUgGCGGCa- -3'
miRNA:   3'- -AUGuaGCUCGGGaCCGUGA-CGCUGca -5'
23582 5' -57.6 NC_005261.1 + 3974 0.66 0.805969
Target:  5'- gUACAUCGgguacgcGGCCCgcagGGCGCgUGCGccACGc -3'
miRNA:   3'- -AUGUAGC-------UCGGGa---CCGUG-ACGC--UGCa -5'
23582 5' -57.6 NC_005261.1 + 4466 0.66 0.779459
Target:  5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3'
miRNA:   3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 4961 0.66 0.788739
Target:  5'- gGCGcCGGcGCCCUGGUACUcGCG-CGc -3'
miRNA:   3'- aUGUaGCU-CGGGACCGUGA-CGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 6135 0.66 0.797876
Target:  5'- cGCGUCGcggccGCCCUccgcGGCAgCgGCGACGg -3'
miRNA:   3'- aUGUAGCu----CGGGA----CCGU-GaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 7119 0.7 0.578009
Target:  5'- ----gCGAGCCCUgagggguugggcGGCGCgGCGACGg -3'
miRNA:   3'- auguaGCUCGGGA------------CCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 7907 0.66 0.797876
Target:  5'- cGCGgcCGGGCCguccaUGGCGCUGCaGCGg -3'
miRNA:   3'- aUGUa-GCUCGGg----ACCGUGACGcUGCa -5'
23582 5' -57.6 NC_005261.1 + 7989 0.66 0.815684
Target:  5'- ----aCGAGCCgCUGGCGCgGCGccugaGCGg -3'
miRNA:   3'- auguaGCUCGG-GACCGUGaCGC-----UGCa -5'
23582 5' -57.6 NC_005261.1 + 10372 0.75 0.325287
Target:  5'- cGC-UCGuGCCCUGGCGCcGCGACc- -3'
miRNA:   3'- aUGuAGCuCGGGACCGUGaCGCUGca -5'
23582 5' -57.6 NC_005261.1 + 10785 0.67 0.728259
Target:  5'- gUGCAaCGAGCgCCUGGaccgaaugcugaaguCUGCGGCGa -3'
miRNA:   3'- -AUGUaGCUCG-GGACCgu-------------GACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 10886 0.68 0.691028
Target:  5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3'
miRNA:   3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 11907 0.73 0.405968
Target:  5'- cGCcgCGGGCCCggcccGGCcggcgGCUGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGGa----CCG-----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 12892 0.67 0.760506
Target:  5'- cUGC-UgGAcGCCCUGcGCGCUGCgGACGc -3'
miRNA:   3'- -AUGuAgCU-CGGGAC-CGUGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 17178 0.66 0.80686
Target:  5'- gGCGUgGgcAGCCCUGcCGCgGCGGCGa -3'
miRNA:   3'- aUGUAgC--UCGGGACcGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 20556 0.69 0.639713
Target:  5'- cGCcgCGGGCCCggccgGGCGCgGCGGgGc -3'
miRNA:   3'- aUGuaGCUCGGGa----CCGUGaCGCUgCa -5'
23582 5' -57.6 NC_005261.1 + 21306 0.66 0.80686
Target:  5'- gGCGUCcagcAGCCCgcGGCGgCUGuCGACGUu -3'
miRNA:   3'- aUGUAGc---UCGGGa-CCGU-GAC-GCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 27546 0.66 0.80686
Target:  5'- gGCG-CGgaAGCCCUcgugcuccaGGCGCUGCG-CGUa -3'
miRNA:   3'- aUGUaGC--UCGGGA---------CCGUGACGCuGCA- -5'
23582 5' -57.6 NC_005261.1 + 28049 0.67 0.72129
Target:  5'- aACGUCGcggaacugccGCCCggggGGCGCggugGCGGCGg -3'
miRNA:   3'- aUGUAGCu---------CGGGa---CCGUGa---CGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.