miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 115403 0.68 0.691028
Target:  5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3'
miRNA:   3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 29892 0.69 0.623209
Target:  5'- gGCggCG-GCCCUGGCGCgggucgcggagcacGCGGCGg -3'
miRNA:   3'- aUGuaGCuCGGGACCGUGa-------------CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 92574 0.69 0.629398
Target:  5'- cGCGUUGAucacGCCCgcugGGCACUGCuccGGCGc -3'
miRNA:   3'- aUGUAGCU----CGGGa---CCGUGACG---CUGCa -5'
23582 5' -57.6 NC_005261.1 + 57956 0.69 0.636619
Target:  5'- gUGCuGUCGGGCggccuggagacguaCCUGGCGC-GCGGCGg -3'
miRNA:   3'- -AUG-UAGCUCG--------------GGACCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 20556 0.69 0.639713
Target:  5'- cGCcgCGGGCCCggccgGGCGCgGCGGgGc -3'
miRNA:   3'- aUGuaGCUCGGGa----CCGUGaCGCUgCa -5'
23582 5' -57.6 NC_005261.1 + 102291 0.68 0.660317
Target:  5'- gGC-UCGGGCCUgGGCgcccgcuggGCUGCGGCGc -3'
miRNA:   3'- aUGuAGCUCGGGaCCG---------UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 51160 0.68 0.670589
Target:  5'- cUACGUgcUGGGCCCggccgcggUGGCGCUGCG-UGUg -3'
miRNA:   3'- -AUGUA--GCUCGGG--------ACCGUGACGCuGCA- -5'
23582 5' -57.6 NC_005261.1 + 80671 0.68 0.670589
Target:  5'- gGCGcCgGAGCCg-GGCGCgUGCGACGUg -3'
miRNA:   3'- aUGUaG-CUCGGgaCCGUG-ACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 99497 0.68 0.670589
Target:  5'- gGCG-CGGGCCCgGGCuCUGCGgGCGc -3'
miRNA:   3'- aUGUaGCUCGGGaCCGuGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 104744 0.69 0.608782
Target:  5'- gUGCucgCGGGCCCcgcgagcgGGCccgGCUGCGGCGg -3'
miRNA:   3'- -AUGua-GCUCGGGa-------CCG---UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 93936 0.69 0.598497
Target:  5'- gGCAgCG-GCCCUGGCccgccGCUgGCGGCGg -3'
miRNA:   3'- aUGUaGCuCGGGACCG-----UGA-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 30064 0.7 0.578009
Target:  5'- gGCcgCGcGCCCUGGCggacgcGCUGCaGGCGg -3'
miRNA:   3'- aUGuaGCuCGGGACCG------UGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 10372 0.75 0.325287
Target:  5'- cGC-UCGuGCCCUGGCGCcGCGACc- -3'
miRNA:   3'- aUGuAGCuCGGGACCGUGaCGCUGca -5'
23582 5' -57.6 NC_005261.1 + 116424 0.73 0.405968
Target:  5'- cGCcgCGGGCCCggcccGGCcggcgGCUGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGGa----CCG-----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 34174 0.73 0.42355
Target:  5'- cGCGcUCGcGGCCgaGGCGCUGCGGCa- -3'
miRNA:   3'- aUGU-AGC-UCGGgaCCGUGACGCUGca -5'
23582 5' -57.6 NC_005261.1 + 3557 0.71 0.517689
Target:  5'- -uCGUCGGGUCCUGGCGgCUG-GugGUu -3'
miRNA:   3'- auGUAGCUCGGGACCGU-GACgCugCA- -5'
23582 5' -57.6 NC_005261.1 + 70831 0.71 0.537555
Target:  5'- gGCggCGcuGGUCCUGGCGCgcGCGGCGUc -3'
miRNA:   3'- aUGuaGC--UCGGGACCGUGa-CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 80153 0.7 0.56782
Target:  5'- gACG-CGGGCCCUGGCGCcGCcguccGCGUc -3'
miRNA:   3'- aUGUaGCUCGGGACCGUGaCGc----UGCA- -5'
23582 5' -57.6 NC_005261.1 + 135762 0.7 0.56782
Target:  5'- ----cCGAGCCCUGGCGCc-CGGCGc -3'
miRNA:   3'- auguaGCUCGGGACCGUGacGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 7119 0.7 0.578009
Target:  5'- ----gCGAGCCCUgagggguugggcGGCGCgGCGACGg -3'
miRNA:   3'- auguaGCUCGGGA------------CCGUGaCGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.