miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 112435 1.06 0.002525
Target:  5'- gUACAUCGAGCCCUGGCACUGCGACGUg -3'
miRNA:   3'- -AUGUAGCUCGGGACCGUGACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 48318 0.77 0.227689
Target:  5'- cGCGUCGGGCCCgggcucgggGGCGCgcGCGGCGa -3'
miRNA:   3'- aUGUAGCUCGGGa--------CCGUGa-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 108343 0.76 0.276274
Target:  5'- cUGCcgCGGGCCCgGGCGCUgGCGGCa- -3'
miRNA:   3'- -AUGuaGCUCGGGaCCGUGA-CGCUGca -5'
23582 5' -57.6 NC_005261.1 + 3826 0.76 0.276274
Target:  5'- cUGCcgCGGGCCCgGGCGCUgGCGGCa- -3'
miRNA:   3'- -AUGuaGCUCGGGaCCGUGA-CGCUGca -5'
23582 5' -57.6 NC_005261.1 + 10372 0.75 0.325287
Target:  5'- cGC-UCGuGCCCUGGCGCcGCGACc- -3'
miRNA:   3'- aUGuAGCuCGGGACCGUGaCGCUGca -5'
23582 5' -57.6 NC_005261.1 + 116424 0.73 0.405968
Target:  5'- cGCcgCGGGCCCggcccGGCcggcgGCUGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGGa----CCG-----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 11907 0.73 0.405968
Target:  5'- cGCcgCGGGCCCggcccGGCcggcgGCUGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGGa----CCG-----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 118680 0.73 0.414702
Target:  5'- gGCggCGGGCgCUGGCGCacgcGCGGCGUg -3'
miRNA:   3'- aUGuaGCUCGgGACCGUGa---CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 34174 0.73 0.42355
Target:  5'- cGCGcUCGcGGCCgaGGCGCUGCGGCa- -3'
miRNA:   3'- aUGU-AGC-UCGGgaCCGUGACGCUGca -5'
23582 5' -57.6 NC_005261.1 + 119607 0.72 0.450756
Target:  5'- gUAUGcCGAGCCgCUGuacguGCACUGCGGCGUg -3'
miRNA:   3'- -AUGUaGCUCGG-GAC-----CGUGACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 33835 0.72 0.478893
Target:  5'- gGCG-CGGGCCCccUGGCGCUG-GGCGg -3'
miRNA:   3'- aUGUaGCUCGGG--ACCGUGACgCUGCa -5'
23582 5' -57.6 NC_005261.1 + 3557 0.71 0.517689
Target:  5'- -uCGUCGGGUCCUGGCGgCUG-GugGUu -3'
miRNA:   3'- auGUAGCUCGGGACCGU-GACgCugCA- -5'
23582 5' -57.6 NC_005261.1 + 70831 0.71 0.537555
Target:  5'- gGCggCGcuGGUCCUGGCGCgcGCGGCGUc -3'
miRNA:   3'- aUGuaGC--UCGGGACCGUGa-CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 135762 0.7 0.56782
Target:  5'- ----cCGAGCCCUGGCGCc-CGGCGc -3'
miRNA:   3'- auguaGCUCGGGACCGUGacGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 80153 0.7 0.56782
Target:  5'- gACG-CGGGCCCUGGCGCcGCcguccGCGUc -3'
miRNA:   3'- aUGUaGCUCGGGACCGUGaCGc----UGCA- -5'
23582 5' -57.6 NC_005261.1 + 31245 0.7 0.56782
Target:  5'- ----cCGAGCCCUGGCGCc-CGGCGc -3'
miRNA:   3'- auguaGCUCGGGACCGUGacGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 7119 0.7 0.578009
Target:  5'- ----gCGAGCCCUgagggguugggcGGCGCgGCGACGg -3'
miRNA:   3'- auguaGCUCGGGA------------CCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 30064 0.7 0.578009
Target:  5'- gGCcgCGcGCCCUGGCggacgcGCUGCaGGCGg -3'
miRNA:   3'- aUGuaGCuCGGGACCG------UGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 240 0.69 0.598497
Target:  5'- cGCGagCGGGCCCggcugcGGCggcgGCUGCGGCGg -3'
miRNA:   3'- aUGUa-GCUCGGGa-----CCG----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 93936 0.69 0.598497
Target:  5'- gGCAgCG-GCCCUGGCccgccGCUgGCGGCGg -3'
miRNA:   3'- aUGUaGCuCGGGACCG-----UGA-CGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.