Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 5' | -57.6 | NC_005261.1 | + | 137923 | 0.69 | 0.598497 |
Target: 5'- cGCGagCGGGCCCggcugcGGCggcgGCUGCGGCGg -3' miRNA: 3'- aUGUa-GCUCGGGa-----CCG----UGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 135762 | 0.7 | 0.56782 |
Target: 5'- ----cCGAGCCCUGGCGCc-CGGCGc -3' miRNA: 3'- auguaGCUCGGGACCGUGacGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 135012 | 0.66 | 0.80686 |
Target: 5'- cGCggCGGGCCCgcacgcGGcCGCgGCGGCGa -3' miRNA: 3'- aUGuaGCUCGGGa-----CC-GUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 134925 | 0.67 | 0.760506 |
Target: 5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3' miRNA: 3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 133641 | 0.68 | 0.711268 |
Target: 5'- -----gGAGCCCUGGCGCcggGgGGCGc -3' miRNA: 3'- auguagCUCGGGACCGUGa--CgCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 130228 | 0.66 | 0.815684 |
Target: 5'- aGCGUCG-GCCCgcucaGGCGCcGCGccaGCGg -3' miRNA: 3'- aUGUAGCuCGGGa----CCGUGaCGC---UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 127794 | 0.66 | 0.797876 |
Target: 5'- aGCggCGGGCC--GGCGCcGCGGCGg -3' miRNA: 3'- aUGuaGCUCGGgaCCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 124907 | 0.68 | 0.701177 |
Target: 5'- cGCG-CGAGUgCgagGGCGCUGCGuACGa -3' miRNA: 3'- aUGUaGCUCGgGa--CCGUGACGC-UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 119607 | 0.72 | 0.450756 |
Target: 5'- gUAUGcCGAGCCgCUGuacguGCACUGCGGCGUg -3' miRNA: 3'- -AUGUaGCUCGG-GAC-----CGUGACGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 118680 | 0.73 | 0.414702 |
Target: 5'- gGCggCGGGCgCUGGCGCacgcGCGGCGUg -3' miRNA: 3'- aUGuaGCUCGgGACCGUGa---CGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 118612 | 0.68 | 0.680829 |
Target: 5'- cGCuGUCGGccguuGCCCUGGcCGCcGCGGCGg -3' miRNA: 3'- aUG-UAGCU-----CGGGACC-GUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 117615 | 0.67 | 0.760506 |
Target: 5'- gGCAgucccggaugCGGGCCaggGGCGCUGUgucGACGUa -3' miRNA: 3'- aUGUa---------GCUCGGga-CCGUGACG---CUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 116424 | 0.73 | 0.405968 |
Target: 5'- cGCcgCGGGCCCggcccGGCcggcgGCUGCGGCGg -3' miRNA: 3'- aUGuaGCUCGGGa----CCG-----UGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 115403 | 0.68 | 0.691028 |
Target: 5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3' miRNA: 3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 113305 | 0.66 | 0.788739 |
Target: 5'- cUGCcgCGGGCCUgGGCccgGCUGCG-CGa -3' miRNA: 3'- -AUGuaGCUCGGGaCCG---UGACGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 112435 | 1.06 | 0.002525 |
Target: 5'- gUACAUCGAGCCCUGGCACUGCGACGUg -3' miRNA: 3'- -AUGUAGCUCGGGACCGUGACGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 110199 | 0.68 | 0.691028 |
Target: 5'- gACGUUGAGgaggCCUGGCGCaaccucgGCGACGc -3' miRNA: 3'- aUGUAGCUCg---GGACCGUGa------CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 108983 | 0.66 | 0.779459 |
Target: 5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3' miRNA: 3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 108731 | 0.67 | 0.760506 |
Target: 5'- cGCG-CGGGCCagcggcGGCGCcGCGGCGUc -3' miRNA: 3'- aUGUaGCUCGGga----CCGUGaCGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 108343 | 0.76 | 0.276274 |
Target: 5'- cUGCcgCGGGCCCgGGCGCUgGCGGCa- -3' miRNA: 3'- -AUGuaGCUCGGGaCCGUGA-CGCUGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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