Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23582 | 5' | -57.6 | NC_005261.1 | + | 73232 | 0.67 | 0.72129 |
Target: 5'- cUACAaggaccuccUgGAGCaCCUGcacGCGCUGCGGCGg -3' miRNA: 3'- -AUGU---------AgCUCG-GGAC---CGUGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 28049 | 0.67 | 0.72129 |
Target: 5'- aACGUCGcggaacugccGCCCggggGGCGCggugGCGGCGg -3' miRNA: 3'- aUGUAGCu---------CGGGa---CCGUGa---CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 33801 | 0.67 | 0.72129 |
Target: 5'- gACG-CGGGCCCgcucaaGCugUGCGGCGc -3' miRNA: 3'- aUGUaGCUCGGGac----CGugACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 10785 | 0.67 | 0.728259 |
Target: 5'- gUGCAaCGAGCgCCUGGaccgaaugcugaaguCUGCGGCGa -3' miRNA: 3'- -AUGUaGCUCG-GGACCgu-------------GACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 117615 | 0.67 | 0.760506 |
Target: 5'- gGCAgucccggaugCGGGCCaggGGCGCUGUgucGACGUa -3' miRNA: 3'- aUGUa---------GCUCGGga-CCGUGACG---CUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 134925 | 0.67 | 0.760506 |
Target: 5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3' miRNA: 3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 12892 | 0.67 | 0.760506 |
Target: 5'- cUGC-UgGAcGCCCUGcGCGCUGCgGACGc -3' miRNA: 3'- -AUGuAgCU-CGGGAC-CGUGACG-CUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 60710 | 0.67 | 0.750852 |
Target: 5'- gGCAUCGGGggCgggGGCGCgGCGGCGa -3' miRNA: 3'- aUGUAGCUCggGa--CCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 42423 | 0.67 | 0.731234 |
Target: 5'- gACcgCGAGCCCccgccGGCGC-GCGGCu- -3' miRNA: 3'- aUGuaGCUCGGGa----CCGUGaCGCUGca -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 99497 | 0.68 | 0.670589 |
Target: 5'- gGCG-CGGGCCCgGGCuCUGCGgGCGc -3' miRNA: 3'- aUGUaGCUCGGGaCCGuGACGC-UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 36995 | 0.68 | 0.710262 |
Target: 5'- cUGCG-CGAGCUgaGGCgccaccucgacgcGCUGCGGCGg -3' miRNA: 3'- -AUGUaGCUCGGgaCCG-------------UGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 133641 | 0.68 | 0.711268 |
Target: 5'- -----gGAGCCCUGGCGCcggGgGGCGc -3' miRNA: 3'- auguagCUCGGGACCGUGa--CgCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 105282 | 0.68 | 0.711268 |
Target: 5'- gGCAgcgccggCGAGCCCgGGCGC-GCGAgCGc -3' miRNA: 3'- aUGUa------GCUCGGGaCCGUGaCGCU-GCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 29123 | 0.68 | 0.711268 |
Target: 5'- -----gGAGCCCUGGCGCcggGgGGCGc -3' miRNA: 3'- auguagCUCGGGACCGUGa--CgCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 71612 | 0.68 | 0.701177 |
Target: 5'- cGCcgCG-GCCCgGGCGCgggcccggGCGGCGg -3' miRNA: 3'- aUGuaGCuCGGGaCCGUGa-------CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 124907 | 0.68 | 0.701177 |
Target: 5'- cGCG-CGAGUgCgagGGCGCUGCGuACGa -3' miRNA: 3'- aUGUaGCUCGgGa--CCGUGACGC-UGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 102291 | 0.68 | 0.660317 |
Target: 5'- gGC-UCGGGCCUgGGCgcccgcuggGCUGCGGCGc -3' miRNA: 3'- aUGuAGCUCGGGaCCG---------UGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 51160 | 0.68 | 0.670589 |
Target: 5'- cUACGUgcUGGGCCCggccgcggUGGCGCUGCG-UGUg -3' miRNA: 3'- -AUGUA--GCUCGGG--------ACCGUGACGCuGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 80671 | 0.68 | 0.670589 |
Target: 5'- gGCGcCgGAGCCg-GGCGCgUGCGACGUg -3' miRNA: 3'- aUGUaG-CUCGGgaCCGUG-ACGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 115403 | 0.68 | 0.691028 |
Target: 5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3' miRNA: 3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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