miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 54254 0.69 0.650022
Target:  5'- gUGCAgCGcGCCCUGGCGCcGCGcACa- -3'
miRNA:   3'- -AUGUaGCuCGGGACCGUGaCGC-UGca -5'
23582 5' -57.6 NC_005261.1 + 137923 0.69 0.598497
Target:  5'- cGCGagCGGGCCCggcugcGGCggcgGCUGCGGCGg -3'
miRNA:   3'- aUGUa-GCUCGGGa-----CCG----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 73773 0.69 0.629398
Target:  5'- ----aCGAGgCgCUGGC-CUGCGACGUg -3'
miRNA:   3'- auguaGCUCgG-GACCGuGACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 98236 0.69 0.639713
Target:  5'- gGCAUCGAuuuccgcgGCCCggugcGGCGCgucagGCGGCGc -3'
miRNA:   3'- aUGUAGCU--------CGGGa----CCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 29892 0.69 0.623209
Target:  5'- gGCggCG-GCCCUGGCGCgggucgcggagcacGCGGCGg -3'
miRNA:   3'- aUGuaGCuCGGGACCGUGa-------------CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 92574 0.69 0.629398
Target:  5'- cGCGUUGAucacGCCCgcugGGCACUGCuccGGCGc -3'
miRNA:   3'- aUGUAGCU----CGGGa---CCGUGACG---CUGCa -5'
23582 5' -57.6 NC_005261.1 + 57956 0.69 0.636619
Target:  5'- gUGCuGUCGGGCggccuggagacguaCCUGGCGC-GCGGCGg -3'
miRNA:   3'- -AUG-UAGCUCG--------------GGACCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 20556 0.69 0.639713
Target:  5'- cGCcgCGGGCCCggccgGGCGCgGCGGgGc -3'
miRNA:   3'- aUGuaGCUCGGGa----CCGUGaCGCUgCa -5'
23582 5' -57.6 NC_005261.1 + 93936 0.69 0.598497
Target:  5'- gGCAgCG-GCCCUGGCccgccGCUgGCGGCGg -3'
miRNA:   3'- aUGUaGCuCGGGACCG-----UGA-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 104744 0.69 0.608782
Target:  5'- gUGCucgCGGGCCCcgcgagcgGGCccgGCUGCGGCGg -3'
miRNA:   3'- -AUGua-GCUCGGGa-------CCG---UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 110199 0.68 0.691028
Target:  5'- gACGUUGAGgaggCCUGGCGCaaccucgGCGACGc -3'
miRNA:   3'- aUGUAGCUCg---GGACCGUGa------CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 10886 0.68 0.691028
Target:  5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3'
miRNA:   3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 102291 0.68 0.660317
Target:  5'- gGC-UCGGGCCUgGGCgcccgcuggGCUGCGGCGc -3'
miRNA:   3'- aUGuAGCUCGGGaCCG---------UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 95720 0.68 0.670589
Target:  5'- cGCGcUCGGGCCCgccGCGCUcaGCGGCGc -3'
miRNA:   3'- aUGU-AGCUCGGGac-CGUGA--CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 57425 0.68 0.680829
Target:  5'- cGCcgCGAGCCCaggaUGcGCACccgcGCGACGg -3'
miRNA:   3'- aUGuaGCUCGGG----AC-CGUGa---CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 99497 0.68 0.670589
Target:  5'- gGCG-CGGGCCCgGGCuCUGCGgGCGc -3'
miRNA:   3'- aUGUaGCUCGGGaCCGuGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 124907 0.68 0.701177
Target:  5'- cGCG-CGAGUgCgagGGCGCUGCGuACGa -3'
miRNA:   3'- aUGUaGCUCGgGa--CCGUGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 36995 0.68 0.710262
Target:  5'- cUGCG-CGAGCUgaGGCgccaccucgacgcGCUGCGGCGg -3'
miRNA:   3'- -AUGUaGCUCGGgaCCG-------------UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 133641 0.68 0.711268
Target:  5'- -----gGAGCCCUGGCGCcggGgGGCGc -3'
miRNA:   3'- auguagCUCGGGACCGUGa--CgCUGCa -5'
23582 5' -57.6 NC_005261.1 + 115403 0.68 0.691028
Target:  5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3'
miRNA:   3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.