miRNA display CGI


Results 41 - 60 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 10886 0.68 0.691028
Target:  5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3'
miRNA:   3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 115403 0.68 0.691028
Target:  5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3'
miRNA:   3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 124907 0.68 0.701177
Target:  5'- cGCG-CGAGUgCgagGGCGCUGCGuACGa -3'
miRNA:   3'- aUGUaGCUCGgGa--CCGUGACGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 71612 0.68 0.701177
Target:  5'- cGCcgCG-GCCCgGGCGCgggcccggGCGGCGg -3'
miRNA:   3'- aUGuaGCuCGGGaCCGUGa-------CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 36995 0.68 0.710262
Target:  5'- cUGCG-CGAGCUgaGGCgccaccucgacgcGCUGCGGCGg -3'
miRNA:   3'- -AUGUaGCUCGGgaCCG-------------UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 29123 0.68 0.711268
Target:  5'- -----gGAGCCCUGGCGCcggGgGGCGc -3'
miRNA:   3'- auguagCUCGGGACCGUGa--CgCUGCa -5'
23582 5' -57.6 NC_005261.1 + 105282 0.68 0.711268
Target:  5'- gGCAgcgccggCGAGCCCgGGCGC-GCGAgCGc -3'
miRNA:   3'- aUGUa------GCUCGGGaCCGUGaCGCU-GCa -5'
23582 5' -57.6 NC_005261.1 + 133641 0.68 0.711268
Target:  5'- -----gGAGCCCUGGCGCcggGgGGCGc -3'
miRNA:   3'- auguagCUCGGGACCGUGa--CgCUGCa -5'
23582 5' -57.6 NC_005261.1 + 73232 0.67 0.72129
Target:  5'- cUACAaggaccuccUgGAGCaCCUGcacGCGCUGCGGCGg -3'
miRNA:   3'- -AUGU---------AgCUCG-GGAC---CGUGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 28049 0.67 0.72129
Target:  5'- aACGUCGcggaacugccGCCCggggGGCGCggugGCGGCGg -3'
miRNA:   3'- aUGUAGCu---------CGGGa---CCGUGa---CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 33801 0.67 0.72129
Target:  5'- gACG-CGGGCCCgcucaaGCugUGCGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGac----CGugACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 10785 0.67 0.728259
Target:  5'- gUGCAaCGAGCgCCUGGaccgaaugcugaaguCUGCGGCGa -3'
miRNA:   3'- -AUGUaGCUCG-GGACCgu-------------GACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 42423 0.67 0.731234
Target:  5'- gACcgCGAGCCCccgccGGCGC-GCGGCu- -3'
miRNA:   3'- aUGuaGCUCGGGa----CCGUGaCGCUGca -5'
23582 5' -57.6 NC_005261.1 + 46784 0.67 0.731234
Target:  5'- gGC-UUGAGCCCcgGGCGCccgucGCGGCGc -3'
miRNA:   3'- aUGuAGCUCGGGa-CCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 60710 0.67 0.750852
Target:  5'- gGCAUCGGGggCgggGGCGCgGCGGCGa -3'
miRNA:   3'- aUGUAGCUCggGa--CCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 89248 0.67 0.750852
Target:  5'- gACAUCGAGUgCCUGucguGUGCggGCGACGg -3'
miRNA:   3'- aUGUAGCUCG-GGAC----CGUGa-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 30408 0.67 0.760506
Target:  5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3'
miRNA:   3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5'
23582 5' -57.6 NC_005261.1 + 12892 0.67 0.760506
Target:  5'- cUGC-UgGAcGCCCUGcGCGCUGCgGACGc -3'
miRNA:   3'- -AUGuAgCU-CGGGAC-CGUGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 67665 0.67 0.760506
Target:  5'- cGCGccCGAGCUCUucgcGGCGCccUGCGGCGg -3'
miRNA:   3'- aUGUa-GCUCGGGA----CCGUG--ACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 134925 0.67 0.760506
Target:  5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3'
miRNA:   3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.