miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 29123 0.68 0.711268
Target:  5'- -----gGAGCCCUGGCGCcggGgGGCGc -3'
miRNA:   3'- auguagCUCGGGACCGUGa--CgCUGCa -5'
23582 5' -57.6 NC_005261.1 + 29892 0.69 0.623209
Target:  5'- gGCggCG-GCCCUGGCGCgggucgcggagcacGCGGCGg -3'
miRNA:   3'- aUGuaGCuCGGGACCGUGa-------------CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 30064 0.7 0.578009
Target:  5'- gGCcgCGcGCCCUGGCggacgcGCUGCaGGCGg -3'
miRNA:   3'- aUGuaGCuCGGGACCG------UGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 30408 0.67 0.760506
Target:  5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3'
miRNA:   3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5'
23582 5' -57.6 NC_005261.1 + 31245 0.7 0.56782
Target:  5'- ----cCGAGCCCUGGCGCc-CGGCGc -3'
miRNA:   3'- auguaGCUCGGGACCGUGacGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 33801 0.67 0.72129
Target:  5'- gACG-CGGGCCCgcucaaGCugUGCGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGac----CGugACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 33835 0.72 0.478893
Target:  5'- gGCG-CGGGCCCccUGGCGCUG-GGCGg -3'
miRNA:   3'- aUGUaGCUCGGG--ACCGUGACgCUGCa -5'
23582 5' -57.6 NC_005261.1 + 34174 0.73 0.42355
Target:  5'- cGCGcUCGcGGCCgaGGCGCUGCGGCa- -3'
miRNA:   3'- aUGU-AGC-UCGGgaCCGUGACGCUGca -5'
23582 5' -57.6 NC_005261.1 + 36995 0.68 0.710262
Target:  5'- cUGCG-CGAGCUgaGGCgccaccucgacgcGCUGCGGCGg -3'
miRNA:   3'- -AUGUaGCUCGGgaCCG-------------UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 42423 0.67 0.731234
Target:  5'- gACcgCGAGCCCccgccGGCGC-GCGGCu- -3'
miRNA:   3'- aUGuaGCUCGGGa----CCGUGaCGCUGca -5'
23582 5' -57.6 NC_005261.1 + 46595 0.66 0.815684
Target:  5'- gACA-CG-GCCCcgGGCACUGCGucccCGa -3'
miRNA:   3'- aUGUaGCuCGGGa-CCGUGACGCu---GCa -5'
23582 5' -57.6 NC_005261.1 + 46784 0.67 0.731234
Target:  5'- gGC-UUGAGCCCcgGGCGCccgucGCGGCGc -3'
miRNA:   3'- aUGuAGCUCGGGa-CCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 48318 0.77 0.227689
Target:  5'- cGCGUCGGGCCCgggcucgggGGCGCgcGCGGCGa -3'
miRNA:   3'- aUGUAGCUCGGGa--------CCGUGa-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 48915 0.66 0.815684
Target:  5'- aGCG-CGAGCCCgGGCGCcaGCGcCGc -3'
miRNA:   3'- aUGUaGCUCGGGaCCGUGa-CGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 49581 0.67 0.770045
Target:  5'- aACA-CGGGCUCggGGCGC-GCGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGa-CCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 51142 0.67 0.770045
Target:  5'- gGCG-CGAaaGCCCccggGGCcCUGCGGCGg -3'
miRNA:   3'- aUGUaGCU--CGGGa---CCGuGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 51160 0.68 0.670589
Target:  5'- cUACGUgcUGGGCCCggccgcggUGGCGCUGCG-UGUg -3'
miRNA:   3'- -AUGUA--GCUCGGG--------ACCGUGACGCuGCA- -5'
23582 5' -57.6 NC_005261.1 + 51783 0.66 0.787817
Target:  5'- gGCGUCGcccugcuGGCCgUGGCcaugcucguGCUGCGGCu- -3'
miRNA:   3'- aUGUAGC-------UCGGgACCG---------UGACGCUGca -5'
23582 5' -57.6 NC_005261.1 + 54254 0.69 0.650022
Target:  5'- gUGCAgCGcGCCCUGGCGCcGCGcACa- -3'
miRNA:   3'- -AUGUaGCuCGGGACCGUGaCGC-UGca -5'
23582 5' -57.6 NC_005261.1 + 54737 0.67 0.770045
Target:  5'- gGCG-CGcGCgCCUGGCGCUcuacgGCGGCGa -3'
miRNA:   3'- aUGUaGCuCG-GGACCGUGA-----CGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.