miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 76484 0.68 0.660317
Target:  5'- cGCGgacccCGAGCCCUcGGCGCUcGCGcGCGc -3'
miRNA:   3'- aUGUa----GCUCGGGA-CCGUGA-CGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 76160 0.66 0.779459
Target:  5'- cGCA-CGAcGCCgUGGCGCUGCaGuACGa -3'
miRNA:   3'- aUGUaGCU-CGGgACCGUGACG-C-UGCa -5'
23582 5' -57.6 NC_005261.1 + 73773 0.69 0.629398
Target:  5'- ----aCGAGgCgCUGGC-CUGCGACGUg -3'
miRNA:   3'- auguaGCUCgG-GACCGuGACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 73232 0.67 0.72129
Target:  5'- cUACAaggaccuccUgGAGCaCCUGcacGCGCUGCGGCGg -3'
miRNA:   3'- -AUGU---------AgCUCG-GGAC---CGUGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 71612 0.68 0.701177
Target:  5'- cGCcgCG-GCCCgGGCGCgggcccggGCGGCGg -3'
miRNA:   3'- aUGuaGCuCGGGaCCGUGa-------CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 70831 0.71 0.537555
Target:  5'- gGCggCGcuGGUCCUGGCGCgcGCGGCGUc -3'
miRNA:   3'- aUGuaGC--UCGGGACCGUGa-CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 70571 0.66 0.797876
Target:  5'- cGCGaaGAGCUCgGGCGCgagcgcaGCGGCGUg -3'
miRNA:   3'- aUGUagCUCGGGaCCGUGa------CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 67665 0.67 0.760506
Target:  5'- cGCGccCGAGCUCUucgcGGCGCccUGCGGCGg -3'
miRNA:   3'- aUGUa-GCUCGGGA----CCGUG--ACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 62293 0.69 0.639713
Target:  5'- cACGUCGGcGCCgCgcgGGCGC-GCGGCGg -3'
miRNA:   3'- aUGUAGCU-CGG-Ga--CCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 60710 0.67 0.750852
Target:  5'- gGCAUCGGGggCgggGGCGCgGCGGCGa -3'
miRNA:   3'- aUGUAGCUCggGa--CCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 60178 0.67 0.770992
Target:  5'- cGCGggggcCGGGCCCgcgaccaccggcuggGGCGgaGCGGCGUa -3'
miRNA:   3'- aUGUa----GCUCGGGa--------------CCGUgaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 60139 0.66 0.779459
Target:  5'- aACA-CGGGCUCccaGGCGCUGCaGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGa--CCGUGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 57956 0.69 0.636619
Target:  5'- gUGCuGUCGGGCggccuggagacguaCCUGGCGC-GCGGCGg -3'
miRNA:   3'- -AUG-UAGCUCG--------------GGACCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 57479 0.66 0.788739
Target:  5'- aACAggcUCGAGUCCcccgcgacgGGCACgucccgGCGGCGg -3'
miRNA:   3'- aUGU---AGCUCGGGa--------CCGUGa-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 57425 0.68 0.680829
Target:  5'- cGCcgCGAGCCCaggaUGcGCACccgcGCGACGg -3'
miRNA:   3'- aUGuaGCUCGGG----AC-CGUGa---CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 56806 0.66 0.788739
Target:  5'- gGCAgCGGGCcacgguguuCCUGGUGCcGCGGCGg -3'
miRNA:   3'- aUGUaGCUCG---------GGACCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 56704 0.66 0.788739
Target:  5'- cGCGguccUGcAGCgCCUGGCGCcgGCGGCGg -3'
miRNA:   3'- aUGUa---GC-UCG-GGACCGUGa-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 54737 0.67 0.770045
Target:  5'- gGCG-CGcGCgCCUGGCGCUcuacgGCGGCGa -3'
miRNA:   3'- aUGUaGCuCG-GGACCGUGA-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 54254 0.69 0.650022
Target:  5'- gUGCAgCGcGCCCUGGCGCcGCGcACa- -3'
miRNA:   3'- -AUGUaGCuCGGGACCGUGaCGC-UGca -5'
23582 5' -57.6 NC_005261.1 + 51783 0.66 0.787817
Target:  5'- gGCGUCGcccugcuGGCCgUGGCcaugcucguGCUGCGGCu- -3'
miRNA:   3'- aUGUAGC-------UCGGgACCG---------UGACGCUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.