miRNA display CGI


Results 61 - 80 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 110199 0.68 0.691028
Target:  5'- gACGUUGAGgaggCCUGGCGCaaccucgGCGACGc -3'
miRNA:   3'- aUGUAGCUCg---GGACCGUGa------CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 107184 0.68 0.691028
Target:  5'- gGCggCGuAGCCCUGcagccGCGCgaagGCGGCGUg -3'
miRNA:   3'- aUGuaGC-UCGGGAC-----CGUGa---CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 118612 0.68 0.680829
Target:  5'- cGCuGUCGGccguuGCCCUGGcCGCcGCGGCGg -3'
miRNA:   3'- aUG-UAGCU-----CGGGACC-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 57425 0.68 0.680829
Target:  5'- cGCcgCGAGCCCaggaUGcGCACccgcGCGACGg -3'
miRNA:   3'- aUGuaGCUCGGG----AC-CGUGa---CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 76160 0.66 0.779459
Target:  5'- cGCA-CGAcGCCgUGGCGCUGCaGuACGa -3'
miRNA:   3'- aUGUaGCU-CGGgACCGUGACG-C-UGCa -5'
23582 5' -57.6 NC_005261.1 + 60139 0.66 0.779459
Target:  5'- aACA-CGGGCUCccaGGCGCUGCaGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGa--CCGUGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 96117 0.66 0.779459
Target:  5'- gACGUCGcuGGCCaUGGUcgacCUGCGGCGg -3'
miRNA:   3'- aUGUAGC--UCGGgACCGu---GACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 48915 0.66 0.815684
Target:  5'- aGCG-CGAGCCCgGGCGCcaGCGcCGc -3'
miRNA:   3'- aUGUaGCUCGGGaCCGUGa-CGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 46595 0.66 0.815684
Target:  5'- gACA-CG-GCCCcgGGCACUGCGucccCGa -3'
miRNA:   3'- aUGUaGCuCGGGa-CCGUGACGCu---GCa -5'
23582 5' -57.6 NC_005261.1 + 135012 0.66 0.80686
Target:  5'- cGCggCGGGCCCgcacgcGGcCGCgGCGGCGa -3'
miRNA:   3'- aUGuaGCUCGGGa-----CC-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 17178 0.66 0.80686
Target:  5'- gGCGUgGgcAGCCCUGcCGCgGCGGCGa -3'
miRNA:   3'- aUGUAgC--UCGGGACcGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 127794 0.66 0.797876
Target:  5'- aGCggCGGGCC--GGCGCcGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGgaCCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 70571 0.66 0.797876
Target:  5'- cGCGaaGAGCUCgGGCGCgagcgcaGCGGCGUg -3'
miRNA:   3'- aUGUagCUCGGGaCCGUGa------CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 99569 0.66 0.788739
Target:  5'- gGCGUCGuAGCUCUGGgC-CUGCG-CGc -3'
miRNA:   3'- aUGUAGC-UCGGGACC-GuGACGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 57479 0.66 0.788739
Target:  5'- aACAggcUCGAGUCCcccgcgacgGGCACgucccgGCGGCGg -3'
miRNA:   3'- aUGU---AGCUCGGGa--------CCGUGa-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 113305 0.66 0.788739
Target:  5'- cUGCcgCGGGCCUgGGCccgGCUGCG-CGa -3'
miRNA:   3'- -AUGuaGCUCGGGaCCG---UGACGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 105578 0.66 0.788739
Target:  5'- cGCGUagaGGGCCUcggGGCGCgugcgcGCGACGa -3'
miRNA:   3'- aUGUAg--CUCGGGa--CCGUGa-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 56806 0.66 0.788739
Target:  5'- gGCAgCGGGCcacgguguuCCUGGUGCcGCGGCGg -3'
miRNA:   3'- aUGUaGCUCG---------GGACCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 51783 0.66 0.787817
Target:  5'- gGCGUCGcccugcuGGCCgUGGCcaugcucguGCUGCGGCu- -3'
miRNA:   3'- aUGUAGC-------UCGGgACCG---------UGACGCUGca -5'
23582 5' -57.6 NC_005261.1 + 4466 0.66 0.779459
Target:  5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3'
miRNA:   3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.