Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23582 | 5' | -57.6 | NC_005261.1 | + | 46784 | 0.67 | 0.731234 |
Target: 5'- gGC-UUGAGCCCcgGGCGCccgucGCGGCGc -3' miRNA: 3'- aUGuAGCUCGGGa-CCGUGa----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 108731 | 0.67 | 0.760506 |
Target: 5'- cGCG-CGGGCCagcggcGGCGCcGCGGCGUc -3' miRNA: 3'- aUGUaGCUCGGga----CCGUGaCGCUGCA- -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 105578 | 0.66 | 0.788739 |
Target: 5'- cGCGUagaGGGCCUcggGGCGCgugcgcGCGACGa -3' miRNA: 3'- aUGUAg--CUCGGGa--CCGUGa-----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 135012 | 0.66 | 0.80686 |
Target: 5'- cGCggCGGGCCCgcacgcGGcCGCgGCGGCGa -3' miRNA: 3'- aUGuaGCUCGGGa-----CC-GUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 62293 | 0.69 | 0.639713 |
Target: 5'- cACGUCGGcGCCgCgcgGGCGC-GCGGCGg -3' miRNA: 3'- aUGUAGCU-CGG-Ga--CCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 110199 | 0.68 | 0.691028 |
Target: 5'- gACGUUGAGgaggCCUGGCGCaaccucgGCGACGc -3' miRNA: 3'- aUGUAGCUCg---GGACCGUGa------CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 51142 | 0.67 | 0.770045 |
Target: 5'- gGCG-CGAaaGCCCccggGGCcCUGCGGCGg -3' miRNA: 3'- aUGUaGCU--CGGGa---CCGuGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 46595 | 0.66 | 0.815684 |
Target: 5'- gACA-CG-GCCCcgGGCACUGCGucccCGa -3' miRNA: 3'- aUGUaGCuCGGGa-CCGUGACGCu---GCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 10886 | 0.68 | 0.691028 |
Target: 5'- ----cCGAGCCC-GGCGCcaacgGCGGCGg -3' miRNA: 3'- auguaGCUCGGGaCCGUGa----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 48915 | 0.66 | 0.815684 |
Target: 5'- aGCG-CGAGCCCgGGCGCcaGCGcCGc -3' miRNA: 3'- aUGUaGCUCGGGaCCGUGa-CGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 49581 | 0.67 | 0.770045 |
Target: 5'- aACA-CGGGCUCggGGCGC-GCGGCGc -3' miRNA: 3'- aUGUaGCUCGGGa-CCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 105282 | 0.68 | 0.711268 |
Target: 5'- gGCAgcgccggCGAGCCCgGGCGC-GCGAgCGc -3' miRNA: 3'- aUGUa------GCUCGGGaCCGUGaCGCU-GCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 96117 | 0.66 | 0.779459 |
Target: 5'- gACGUCGcuGGCCaUGGUcgacCUGCGGCGg -3' miRNA: 3'- aUGUAGC--UCGGgACCGu---GACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 56806 | 0.66 | 0.788739 |
Target: 5'- gGCAgCGGGCcacgguguuCCUGGUGCcGCGGCGg -3' miRNA: 3'- aUGUaGCUCG---------GGACCGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 99569 | 0.66 | 0.788739 |
Target: 5'- gGCGUCGuAGCUCUGGgC-CUGCG-CGc -3' miRNA: 3'- aUGUAGC-UCGGGACC-GuGACGCuGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 17178 | 0.66 | 0.80686 |
Target: 5'- gGCGUgGgcAGCCCUGcCGCgGCGGCGa -3' miRNA: 3'- aUGUAgC--UCGGGACcGUGaCGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 240 | 0.69 | 0.598497 |
Target: 5'- cGCGagCGGGCCCggcugcGGCggcgGCUGCGGCGg -3' miRNA: 3'- aUGUa-GCUCGGGa-----CCG----UGACGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 98236 | 0.69 | 0.639713 |
Target: 5'- gGCAUCGAuuuccgcgGCCCggugcGGCGCgucagGCGGCGc -3' miRNA: 3'- aUGUAGCU--------CGGGa----CCGUGa----CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 95720 | 0.68 | 0.670589 |
Target: 5'- cGCGcUCGGGCCCgccGCGCUcaGCGGCGc -3' miRNA: 3'- aUGU-AGCUCGGGac-CGUGA--CGCUGCa -5' |
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23582 | 5' | -57.6 | NC_005261.1 | + | 107184 | 0.68 | 0.691028 |
Target: 5'- gGCggCGuAGCCCUGcagccGCGCgaagGCGGCGUg -3' miRNA: 3'- aUGuaGC-UCGGGAC-----CGUGa---CGCUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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