miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 99569 0.66 0.788739
Target:  5'- gGCGUCGuAGCUCUGGgC-CUGCG-CGc -3'
miRNA:   3'- aUGUAGC-UCGGGACC-GuGACGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 57479 0.66 0.788739
Target:  5'- aACAggcUCGAGUCCcccgcgacgGGCACgucccgGCGGCGg -3'
miRNA:   3'- aUGU---AGCUCGGGa--------CCGUGa-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 105578 0.66 0.788739
Target:  5'- cGCGUagaGGGCCUcggGGCGCgugcgcGCGACGa -3'
miRNA:   3'- aUGUAg--CUCGGGa--CCGUGa-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 51783 0.66 0.787817
Target:  5'- gGCGUCGcccugcuGGCCgUGGCcaugcucguGCUGCGGCu- -3'
miRNA:   3'- aUGUAGC-------UCGGgACCG---------UGACGCUGca -5'
23582 5' -57.6 NC_005261.1 + 96117 0.66 0.779459
Target:  5'- gACGUCGcuGGCCaUGGUcgacCUGCGGCGg -3'
miRNA:   3'- aUGUAGC--UCGGgACCGu---GACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 108983 0.66 0.779459
Target:  5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3'
miRNA:   3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 98760 0.66 0.779459
Target:  5'- cGCggCGGGCCCguuggGGCGCcGCGcCGc -3'
miRNA:   3'- aUGuaGCUCGGGa----CCGUGaCGCuGCa -5'
23582 5' -57.6 NC_005261.1 + 89981 0.66 0.779459
Target:  5'- uUGCAUUG-GCCCc-GCGCUGCGGgGg -3'
miRNA:   3'- -AUGUAGCuCGGGacCGUGACGCUgCa -5'
23582 5' -57.6 NC_005261.1 + 76160 0.66 0.779459
Target:  5'- cGCA-CGAcGCCgUGGCGCUGCaGuACGa -3'
miRNA:   3'- aUGUaGCU-CGGgACCGUGACG-C-UGCa -5'
23582 5' -57.6 NC_005261.1 + 60139 0.66 0.779459
Target:  5'- aACA-CGGGCUCccaGGCGCUGCaGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGa--CCGUGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 4466 0.66 0.779459
Target:  5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3'
miRNA:   3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 60178 0.67 0.770992
Target:  5'- cGCGggggcCGGGCCCgcgaccaccggcuggGGCGgaGCGGCGUa -3'
miRNA:   3'- aUGUa----GCUCGGGa--------------CCGUgaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 54737 0.67 0.770045
Target:  5'- gGCG-CGcGCgCCUGGCGCUcuacgGCGGCGa -3'
miRNA:   3'- aUGUaGCuCG-GGACCGUGA-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 49581 0.67 0.770045
Target:  5'- aACA-CGGGCUCggGGCGC-GCGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGa-CCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 51142 0.67 0.770045
Target:  5'- gGCG-CGAaaGCCCccggGGCcCUGCGGCGg -3'
miRNA:   3'- aUGUaGCU--CGGGa---CCGuGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 108731 0.67 0.760506
Target:  5'- cGCG-CGGGCCagcggcGGCGCcGCGGCGUc -3'
miRNA:   3'- aUGUaGCUCGGga----CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 12892 0.67 0.760506
Target:  5'- cUGC-UgGAcGCCCUGcGCGCUGCgGACGc -3'
miRNA:   3'- -AUGuAgCU-CGGGAC-CGUGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 134925 0.67 0.760506
Target:  5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3'
miRNA:   3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5'
23582 5' -57.6 NC_005261.1 + 117615 0.67 0.760506
Target:  5'- gGCAgucccggaugCGGGCCaggGGCGCUGUgucGACGUa -3'
miRNA:   3'- aUGUa---------GCUCGGga-CCGUGACG---CUGCA- -5'
23582 5' -57.6 NC_005261.1 + 67665 0.67 0.760506
Target:  5'- cGCGccCGAGCUCUucgcGGCGCccUGCGGCGg -3'
miRNA:   3'- aUGUa-GCUCGGGA----CCGUG--ACGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.