miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 5' -57.6 NC_005261.1 + 130228 0.66 0.815684
Target:  5'- aGCGUCG-GCCCgcucaGGCGCcGCGccaGCGg -3'
miRNA:   3'- aUGUAGCuCGGGa----CCGUGaCGC---UGCa -5'
23582 5' -57.6 NC_005261.1 + 57425 0.68 0.680829
Target:  5'- cGCcgCGAGCCCaggaUGcGCACccgcGCGACGg -3'
miRNA:   3'- aUGuaGCUCGGG----AC-CGUGa---CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 118612 0.68 0.680829
Target:  5'- cGCuGUCGGccguuGCCCUGGcCGCcGCGGCGg -3'
miRNA:   3'- aUG-UAGCU-----CGGGACC-GUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 30408 0.67 0.760506
Target:  5'- gACAUgCGGGCCggGGCACcGCGGgCGg -3'
miRNA:   3'- aUGUA-GCUCGGgaCCGUGaCGCU-GCa -5'
23582 5' -57.6 NC_005261.1 + 51783 0.66 0.787817
Target:  5'- gGCGUCGcccugcuGGCCgUGGCcaugcucguGCUGCGGCu- -3'
miRNA:   3'- aUGUAGC-------UCGGgACCG---------UGACGCUGca -5'
23582 5' -57.6 NC_005261.1 + 73773 0.69 0.629398
Target:  5'- ----aCGAGgCgCUGGC-CUGCGACGUg -3'
miRNA:   3'- auguaGCUCgG-GACCGuGACGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 76484 0.68 0.660317
Target:  5'- cGCGgacccCGAGCCCUcGGCGCUcGCGcGCGc -3'
miRNA:   3'- aUGUa----GCUCGGGA-CCGUGA-CGC-UGCa -5'
23582 5' -57.6 NC_005261.1 + 57479 0.66 0.788739
Target:  5'- aACAggcUCGAGUCCcccgcgacgGGCACgucccgGCGGCGg -3'
miRNA:   3'- aUGU---AGCUCGGGa--------CCGUGa-----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 29123 0.68 0.711268
Target:  5'- -----gGAGCCCUGGCGCcggGgGGCGc -3'
miRNA:   3'- auguagCUCGGGACCGUGa--CgCUGCa -5'
23582 5' -57.6 NC_005261.1 + 46784 0.67 0.731234
Target:  5'- gGC-UUGAGCCCcgGGCGCccgucGCGGCGc -3'
miRNA:   3'- aUGuAGCUCGGGa-CCGUGa----CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 70571 0.66 0.797876
Target:  5'- cGCGaaGAGCUCgGGCGCgagcgcaGCGGCGUg -3'
miRNA:   3'- aUGUagCUCGGGaCCGUGa------CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 127794 0.66 0.797876
Target:  5'- aGCggCGGGCC--GGCGCcGCGGCGg -3'
miRNA:   3'- aUGuaGCUCGGgaCCGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 31245 0.7 0.56782
Target:  5'- ----cCGAGCCCUGGCGCc-CGGCGc -3'
miRNA:   3'- auguaGCUCGGGACCGUGacGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 137923 0.69 0.598497
Target:  5'- cGCGagCGGGCCCggcugcGGCggcgGCUGCGGCGg -3'
miRNA:   3'- aUGUa-GCUCGGGa-----CCG----UGACGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 107184 0.68 0.691028
Target:  5'- gGCggCGuAGCCCUGcagccGCGCgaagGCGGCGUg -3'
miRNA:   3'- aUGuaGC-UCGGGAC-----CGUGa---CGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 60139 0.66 0.779459
Target:  5'- aACA-CGGGCUCccaGGCGCUGCaGGCGc -3'
miRNA:   3'- aUGUaGCUCGGGa--CCGUGACG-CUGCa -5'
23582 5' -57.6 NC_005261.1 + 4466 0.66 0.779459
Target:  5'- gGCggCG-GCCCgucgcgcGGCGCcGCGGCGUa -3'
miRNA:   3'- aUGuaGCuCGGGa------CCGUGaCGCUGCA- -5'
23582 5' -57.6 NC_005261.1 + 17178 0.66 0.80686
Target:  5'- gGCGUgGgcAGCCCUGcCGCgGCGGCGa -3'
miRNA:   3'- aUGUAgC--UCGGGACcGUGaCGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 89248 0.67 0.750852
Target:  5'- gACAUCGAGUgCCUGucguGUGCggGCGACGg -3'
miRNA:   3'- aUGUAGCUCG-GGAC----CGUGa-CGCUGCa -5'
23582 5' -57.6 NC_005261.1 + 71612 0.68 0.701177
Target:  5'- cGCcgCG-GCCCgGGCGCgggcccggGCGGCGg -3'
miRNA:   3'- aUGuaGCuCGGGaCCGUGa-------CGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.