miRNA display CGI


Results 61 - 80 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 61116 0.66 0.648344
Target:  5'- --cGCGCUGCgCC-GUGCGCuGCUuCGcGCa -3'
miRNA:   3'- ucaUGCGGCG-GGaCACGCG-CGA-GC-CG- -5'
23583 3' -61.3 NC_005261.1 + 125173 0.66 0.648344
Target:  5'- --gACG-CGCCCggcagGgGCGCGCgCGGCc -3'
miRNA:   3'- ucaUGCgGCGGGa----CaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 107243 0.66 0.648344
Target:  5'- --cGCaGCCGCCCacccgcggGCGCGCg-GGCa -3'
miRNA:   3'- ucaUG-CGGCGGGaca-----CGCGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 124262 0.66 0.648344
Target:  5'- gAGUuCGUCGuCCCUGacccGCGCGUuuccgcgCGGCu -3'
miRNA:   3'- -UCAuGCGGC-GGGACa---CGCGCGa------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 116414 0.66 0.648344
Target:  5'- --cACGCgCGCCCgccGCGgGCcCGGCc -3'
miRNA:   3'- ucaUGCG-GCGGGacaCGCgCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 86391 0.66 0.648344
Target:  5'- --gGCGCUGCCCU---UGCGC-CGGUg -3'
miRNA:   3'- ucaUGCGGCGGGAcacGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 99679 0.66 0.648344
Target:  5'- ---cCGCCGCa-UGgccGCGCGC-CGGCg -3'
miRNA:   3'- ucauGCGGCGggACa--CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 108083 0.66 0.648344
Target:  5'- --gGCGCCGCUaaGgcgcGCGCGCUCcaccgcgucgcgGGCc -3'
miRNA:   3'- ucaUGCGGCGGgaCa---CGCGCGAG------------CCG- -5'
23583 3' -61.3 NC_005261.1 + 84650 0.66 0.648344
Target:  5'- uGGgGCGCCGCCggcccgcggccgCUaGUGCGC-CUgGGCc -3'
miRNA:   3'- -UCaUGCGGCGG------------GA-CACGCGcGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 129825 0.66 0.648344
Target:  5'- -cUGCGCCcggauGCCCaGcGCGCGCUCcaGCa -3'
miRNA:   3'- ucAUGCGG-----CGGGaCaCGCGCGAGc-CG- -5'
23583 3' -61.3 NC_005261.1 + 13939 0.66 0.648344
Target:  5'- uAGUGCGCaacuGCCauuuuuUGUcgcggccggGCGCGCgggCGGCg -3'
miRNA:   3'- -UCAUGCGg---CGGg-----ACA---------CGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 73320 0.66 0.648344
Target:  5'- gAGcACGCCGCgCUGaaccaCGCGCUgcuggaccCGGCg -3'
miRNA:   3'- -UCaUGCGGCGgGACac---GCGCGA--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 7603 0.66 0.648344
Target:  5'- --cACGCgCGCCCc--GCGCGCUguugaaGGCg -3'
miRNA:   3'- ucaUGCG-GCGGGacaCGCGCGAg-----CCG- -5'
23583 3' -61.3 NC_005261.1 + 64000 0.66 0.647351
Target:  5'- aAGUA-GCCGCCCaucagcgcguaggUGaGCGUGUucucgUCGGCg -3'
miRNA:   3'- -UCAUgCGGCGGG-------------ACaCGCGCG-----AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 130324 0.66 0.647351
Target:  5'- --aGCGCCauggacgGCCCg--GcCGCGCUCGGg -3'
miRNA:   3'- ucaUGCGG-------CGGGacaC-GCGCGAGCCg -5'
23583 3' -61.3 NC_005261.1 + 99860 0.66 0.638408
Target:  5'- aGGUGCcgcuucccgGCCGCCCcaaagGCcCGCUgGGCg -3'
miRNA:   3'- -UCAUG---------CGGCGGGaca--CGcGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 98360 0.66 0.638408
Target:  5'- --cGCGCgGCCUgcuggccgUGUGCcuggGCGCcCGGCg -3'
miRNA:   3'- ucaUGCGgCGGG--------ACACG----CGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 5594 0.66 0.638408
Target:  5'- aGGgcCGCCGCgCCc--GCGUcCUCGGCg -3'
miRNA:   3'- -UCauGCGGCG-GGacaCGCGcGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 134644 0.66 0.638408
Target:  5'- --gGCGCgGCCCgcgacgcgGUggaGCGCGCgcgccuuagCGGCg -3'
miRNA:   3'- ucaUGCGgCGGGa-------CA---CGCGCGa--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 91149 0.66 0.638408
Target:  5'- --gGC-CCGCCUUcggcGUGCacgcguaccacGCGCUCGGCc -3'
miRNA:   3'- ucaUGcGGCGGGA----CACG-----------CGCGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.