miRNA display CGI


Results 41 - 60 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 66262 0.66 0.658269
Target:  5'- cAGcACGCCGUCCaccGgGCGCccgCGGCu -3'
miRNA:   3'- -UCaUGCGGCGGGacaCgCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 22827 0.66 0.658269
Target:  5'- ---cCGCCGCCgUUG-GCGCcggGCUCGGg -3'
miRNA:   3'- ucauGCGGCGG-GACaCGCG---CGAGCCg -5'
23583 3' -61.3 NC_005261.1 + 52183 0.66 0.658269
Target:  5'- --cGCGCCGCCgUGgagaaCGUGCUC-GCa -3'
miRNA:   3'- ucaUGCGGCGGgACac---GCGCGAGcCG- -5'
23583 3' -61.3 NC_005261.1 + 103282 0.66 0.658269
Target:  5'- cAGgcCGCCggGCCCggGU-CGCGC-CGGCc -3'
miRNA:   3'- -UCauGCGG--CGGGa-CAcGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 76932 0.66 0.658269
Target:  5'- aGGUGgGCgGCagUGguagaaGCGCGuCUCGGCg -3'
miRNA:   3'- -UCAUgCGgCGggACa-----CGCGC-GAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 27699 0.66 0.658269
Target:  5'- cGUGCGCgCGCCCUccUGCGCcccGCagacgaCGGCc -3'
miRNA:   3'- uCAUGCG-GCGGGAc-ACGCG---CGa-----GCCG- -5'
23583 3' -61.3 NC_005261.1 + 121013 0.66 0.657277
Target:  5'- gAGgcugGCGCUGCUguccgugCUGgGCGCGCUgcucgccgccgCGGCa -3'
miRNA:   3'- -UCa---UGCGGCGG-------GACaCGCGCGA-----------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 18614 0.66 0.657277
Target:  5'- --cACGCCGCa--GUGCacguacaGCgGCUCGGCa -3'
miRNA:   3'- ucaUGCGGCGggaCACG-------CG-CGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 62524 0.66 0.652316
Target:  5'- --gGCGUCGaCCgUG-GCGCGCagcaggcucugguccUCGGCg -3'
miRNA:   3'- ucaUGCGGC-GGgACaCGCGCG---------------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 31650 0.66 0.652316
Target:  5'- aGGaGCGCCGCgcggcggccccggggCCgGcGCGCGC-CGGCc -3'
miRNA:   3'- -UCaUGCGGCG---------------GGaCaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 13939 0.66 0.648344
Target:  5'- uAGUGCGCaacuGCCauuuuuUGUcgcggccggGCGCGCgggCGGCg -3'
miRNA:   3'- -UCAUGCGg---CGGg-----ACA---------CGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 108083 0.66 0.648344
Target:  5'- --gGCGCCGCUaaGgcgcGCGCGCUCcaccgcgucgcgGGCc -3'
miRNA:   3'- ucaUGCGGCGGgaCa---CGCGCGAG------------CCG- -5'
23583 3' -61.3 NC_005261.1 + 128128 0.66 0.648344
Target:  5'- uGU-CGCCGCCgCUGccgGgGCGCggCGGg -3'
miRNA:   3'- uCAuGCGGCGG-GACa--CgCGCGa-GCCg -5'
23583 3' -61.3 NC_005261.1 + 125173 0.66 0.648344
Target:  5'- --gACG-CGCCCggcagGgGCGCGCgCGGCc -3'
miRNA:   3'- ucaUGCgGCGGGa----CaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 7603 0.66 0.648344
Target:  5'- --cACGCgCGCCCc--GCGCGCUguugaaGGCg -3'
miRNA:   3'- ucaUGCG-GCGGGacaCGCGCGAg-----CCG- -5'
23583 3' -61.3 NC_005261.1 + 84650 0.66 0.648344
Target:  5'- uGGgGCGCCGCCggcccgcggccgCUaGUGCGC-CUgGGCc -3'
miRNA:   3'- -UCaUGCGGCGG------------GA-CACGCGcGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 73320 0.66 0.648344
Target:  5'- gAGcACGCCGCgCUGaaccaCGCGCUgcuggaccCGGCg -3'
miRNA:   3'- -UCaUGCGGCGgGACac---GCGCGA--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 124262 0.66 0.648344
Target:  5'- gAGUuCGUCGuCCCUGacccGCGCGUuuccgcgCGGCu -3'
miRNA:   3'- -UCAuGCGGC-GGGACa---CGCGCGa------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 99679 0.66 0.648344
Target:  5'- ---cCGCCGCa-UGgccGCGCGC-CGGCg -3'
miRNA:   3'- ucauGCGGCGggACa--CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 86391 0.66 0.648344
Target:  5'- --gGCGCUGCCCU---UGCGC-CGGUg -3'
miRNA:   3'- ucaUGCGGCGGGAcacGCGCGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.