miRNA display CGI


Results 41 - 60 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 136096 0.76 0.169202
Target:  5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCGGCg-GgACaCGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 75158 0.76 0.169202
Target:  5'- cGUAC-CCGCCgCUGUGCGCcaGCgacgCGGCg -3'
miRNA:   3'- uCAUGcGGCGG-GACACGCG--CGa---GCCG- -5'
23583 3' -61.3 NC_005261.1 + 134497 0.79 0.122305
Target:  5'- cGGUGCGCCGCCg---GCGCGUcCGGCa -3'
miRNA:   3'- -UCAUGCGGCGGgacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 14130 0.79 0.122305
Target:  5'- cGGUGC-CgGCCCUGUGCGCGCgcuacgCGGg -3'
miRNA:   3'- -UCAUGcGgCGGGACACGCGCGa-----GCCg -5'
23583 3' -61.3 NC_005261.1 + 90843 0.81 0.078895
Target:  5'- gGGgcgGCGCCGCCCcgacgguUGUGCGCGCgcuggugcccgUCGGCu -3'
miRNA:   3'- -UCa--UGCGGCGGG-------ACACGCGCG-----------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 88986 0.75 0.202604
Target:  5'- --gACGCCGCCgcggcggcggccgacCUGcGCGCGCUgGGCg -3'
miRNA:   3'- ucaUGCGGCGG---------------GACaCGCGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 17841 0.75 0.20555
Target:  5'- --gACGCCGCUCUGcucgGUGCGCgagggcgCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGACa---CGCGCGa------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 63088 0.73 0.266377
Target:  5'- --cGCGUCGCCagg-GgGCGCUCGGCg -3'
miRNA:   3'- ucaUGCGGCGGgacaCgCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 31194 0.73 0.265764
Target:  5'- uGUACGCggcgcguggcgCGCCCUgcuccuugggcacGUG-GCGCUCGGCg -3'
miRNA:   3'- uCAUGCG-----------GCGGGA-------------CACgCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 13643 0.74 0.260897
Target:  5'- --cACGCCGCCCaacgaucagcgcgugGUGCGCGagCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGa--------------CACGCGCgaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 133843 0.74 0.260293
Target:  5'- ---cCGCCGCCCggccgcGUGCGC-UUCGGCg -3'
miRNA:   3'- ucauGCGGCGGGa-----CACGCGcGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 31299 0.74 0.260293
Target:  5'- aGGUGCgcgugucgcugGCgGCCCUGcaGCGCGCcgCGGCg -3'
miRNA:   3'- -UCAUG-----------CGgCGGGACa-CGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 70834 0.74 0.254323
Target:  5'- --gGCGCUgGUCCUG-GCGCGCgCGGCg -3'
miRNA:   3'- ucaUGCGG-CGGGACaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 37499 0.74 0.248466
Target:  5'- --cGCGCCGCCgCgc-GCGCGCgCGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 53524 0.74 0.248466
Target:  5'- --cGCGCCGCUUUGUgcucgcgugcccGCGCGC-CGGCu -3'
miRNA:   3'- ucaUGCGGCGGGACA------------CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 45978 0.74 0.242721
Target:  5'- gAGUACcggGCCuUCCUGgccuccauccGCGCGCUCGGCg -3'
miRNA:   3'- -UCAUG---CGGcGGGACa---------CGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 27287 0.74 0.237086
Target:  5'- gGGUGgGCCGCCg-G-GCgGCGCUCGGUg -3'
miRNA:   3'- -UCAUgCGGCGGgaCaCG-CGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 45208 0.75 0.220839
Target:  5'- uGUGCGCgGgCUUGUGgGCGCUCGcGUa -3'
miRNA:   3'- uCAUGCGgCgGGACACgCGCGAGC-CG- -5'
23583 3' -61.3 NC_005261.1 + 44403 0.75 0.219267
Target:  5'- --gGCGCCGCCCggcggcugcggcggUGgcggcgGCGCGCgggCGGCg -3'
miRNA:   3'- ucaUGCGGCGGG--------------ACa-----CGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 33077 0.75 0.210038
Target:  5'- --gACGCCGCCCUcGagccgcgaggaccUGCGCGCgcCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGA-C-------------ACGCGCGa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.