Results 21 - 40 of 549 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23583 | 3' | -61.3 | NC_005261.1 | + | 27287 | 0.74 | 0.237086 |
Target: 5'- gGGUGgGCCGCCg-G-GCgGCGCUCGGUg -3' miRNA: 3'- -UCAUgCGGCGGgaCaCG-CGCGAGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 85106 | 0.87 | 0.029863 |
Target: 5'- cGUACGCCGCCCUGUuggcgGCGCGCagcgccgCGGCg -3' miRNA: 3'- uCAUGCGGCGGGACA-----CGCGCGa------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 14130 | 0.79 | 0.122305 |
Target: 5'- cGGUGC-CgGCCCUGUGCGCGCgcuacgCGGg -3' miRNA: 3'- -UCAUGcGgCGGGACACGCGCGa-----GCCg -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 134497 | 0.79 | 0.122305 |
Target: 5'- cGGUGCGCCGCCg---GCGCGUcCGGCa -3' miRNA: 3'- -UCAUGCGGCGGgacaCGCGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 75158 | 0.76 | 0.169202 |
Target: 5'- cGUAC-CCGCCgCUGUGCGCcaGCgacgCGGCg -3' miRNA: 3'- uCAUGcGGCGG-GACACGCG--CGa---GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 136096 | 0.76 | 0.169202 |
Target: 5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3' miRNA: 3'- -UCaUGCGGCg-GgACaCGCGCGAGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 29502 | 0.76 | 0.17341 |
Target: 5'- --gGCGCCGCCgCUGgcccGCGCGCUCuucgccguGGCg -3' miRNA: 3'- ucaUGCGGCGG-GACa---CGCGCGAG--------CCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 35244 | 0.76 | 0.177711 |
Target: 5'- --gGCgGCCGCCgUGUcGCGCGCggCGGCg -3' miRNA: 3'- ucaUG-CGGCGGgACA-CGCGCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 7199 | 0.76 | 0.182106 |
Target: 5'- --gGCGUCGCCg---GCGCGCUCGGCc -3' miRNA: 3'- ucaUGCGGCGGgacaCGCGCGAGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 99925 | 0.76 | 0.182106 |
Target: 5'- --cGgGCCGCCC--UGCGCGCUCaGGCg -3' miRNA: 3'- ucaUgCGGCGGGacACGCGCGAG-CCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 90548 | 0.76 | 0.186597 |
Target: 5'- --gGCGCCGCgggcggCC-GUGCuGCGCUCGGCg -3' miRNA: 3'- ucaUGCGGCG------GGaCACG-CGCGAGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 136319 | 0.76 | 0.190723 |
Target: 5'- cAGUGCGCCGCgcgcuggCCUGagcgGCGCGCgcuGGCg -3' miRNA: 3'- -UCAUGCGGCG-------GGACa---CGCGCGag-CCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 62342 | 0.76 | 0.195873 |
Target: 5'- aGGUugGCGUCGCCgCUGcGCGCGCccaCGGCg -3' miRNA: 3'- -UCA--UGCGGCGG-GACaCGCGCGa--GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 19383 | 0.75 | 0.200661 |
Target: 5'- gGGcGCGCCGCCCUccGCGCcGCagagCGGCa -3' miRNA: 3'- -UCaUGCGGCGGGAcaCGCG-CGa---GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 88986 | 0.75 | 0.202604 |
Target: 5'- --gACGCCGCCgcggcggcggccgacCUGcGCGCGCUgGGCg -3' miRNA: 3'- ucaUGCGGCGG---------------GACaCGCGCGAgCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 17841 | 0.75 | 0.20555 |
Target: 5'- --gACGCCGCUCUGcucgGUGCGCgagggcgCGGCg -3' miRNA: 3'- ucaUGCGGCGGGACa---CGCGCGa------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 33077 | 0.75 | 0.210038 |
Target: 5'- --gACGCCGCCCUcGagccgcgaggaccUGCGCGCgcCGGCg -3' miRNA: 3'- ucaUGCGGCGGGA-C-------------ACGCGCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 44403 | 0.75 | 0.219267 |
Target: 5'- --gGCGCCGCCCggcggcugcggcggUGgcggcgGCGCGCgggCGGCg -3' miRNA: 3'- ucaUGCGGCGGG--------------ACa-----CGCGCGa--GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 45208 | 0.75 | 0.220839 |
Target: 5'- uGUGCGCgGgCUUGUGgGCGCUCGcGUa -3' miRNA: 3'- uCAUGCGgCgGGACACgCGCGAGC-CG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 45978 | 0.74 | 0.242721 |
Target: 5'- gAGUACcggGCCuUCCUGgccuccauccGCGCGCUCGGCg -3' miRNA: 3'- -UCAUG---CGGcGGGACa---------CGCGCGAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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