miRNA display CGI


Results 21 - 40 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 124262 0.66 0.648344
Target:  5'- gAGUuCGUCGuCCCUGacccGCGCGUuuccgcgCGGCu -3'
miRNA:   3'- -UCAuGCGGC-GGGACa---CGCGCGa------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 58109 0.66 0.632443
Target:  5'- --gGCGCCGCCgCUGccGCGgCGCccaagccgguaccgCGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GACa-CGC-GCGa-------------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 62524 0.66 0.652316
Target:  5'- --gGCGUCGaCCgUG-GCGCGCagcaggcucugguccUCGGCg -3'
miRNA:   3'- ucaUGCGGC-GGgACaCGCGCG---------------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 47356 0.66 0.638408
Target:  5'- ---cCGUCGCCCa--GCGCGCagaCGGCg -3'
miRNA:   3'- ucauGCGGCGGGacaCGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 73320 0.66 0.648344
Target:  5'- gAGcACGCCGCgCUGaaccaCGCGCUgcuggaccCGGCg -3'
miRNA:   3'- -UCaUGCGGCGgGACac---GCGCGA--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 27699 0.66 0.658269
Target:  5'- cGUGCGCgCGCCCUccUGCGCcccGCagacgaCGGCc -3'
miRNA:   3'- uCAUGCG-GCGGGAc-ACGCG---CGa-----GCCG- -5'
23583 3' -61.3 NC_005261.1 + 70783 0.66 0.638408
Target:  5'- cGUGCgggcggaccgGCUGCCCUuUGgGCGCU-GGCc -3'
miRNA:   3'- uCAUG----------CGGCGGGAcACgCGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 122452 0.66 0.638408
Target:  5'- cGGgcgGCGCCcgccagcgGCCUUGUGUaucgcggcgagGCGgUCGGCc -3'
miRNA:   3'- -UCa--UGCGG--------CGGGACACG-----------CGCgAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 128128 0.66 0.648344
Target:  5'- uGU-CGCCGCCgCUGccgGgGCGCggCGGg -3'
miRNA:   3'- uCAuGCGGCGG-GACa--CgCGCGa-GCCg -5'
23583 3' -61.3 NC_005261.1 + 125173 0.66 0.648344
Target:  5'- --gACG-CGCCCggcagGgGCGCGCgCGGCc -3'
miRNA:   3'- ucaUGCgGCGGGa----CaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 86391 0.66 0.648344
Target:  5'- --gGCGCUGCCCU---UGCGC-CGGUg -3'
miRNA:   3'- ucaUGCGGCGGGAcacGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 15334 0.66 0.658269
Target:  5'- --aACGCCGUCCcGgagGCGCugguucugucgGaCUCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGaCa--CGCG-----------C-GAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 18614 0.66 0.657277
Target:  5'- --cACGCCGCa--GUGCacguacaGCgGCUCGGCa -3'
miRNA:   3'- ucaUGCGGCGggaCACG-------CG-CGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 84650 0.66 0.648344
Target:  5'- uGGgGCGCCGCCggcccgcggccgCUaGUGCGC-CUgGGCc -3'
miRNA:   3'- -UCaUGCGGCGG------------GA-CACGCGcGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 13939 0.66 0.648344
Target:  5'- uAGUGCGCaacuGCCauuuuuUGUcgcggccggGCGCGCgggCGGCg -3'
miRNA:   3'- -UCAUGCGg---CGGg-----ACA---------CGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 135849 0.66 0.628467
Target:  5'- ---uCGCCGCCa---GCGCGCcgcugCGGCg -3'
miRNA:   3'- ucauGCGGCGGgacaCGCGCGa----GCCG- -5'
23583 3' -61.3 NC_005261.1 + 121013 0.66 0.657277
Target:  5'- gAGgcugGCGCUGCUguccgugCUGgGCGCGCUgcucgccgccgCGGCa -3'
miRNA:   3'- -UCa---UGCGGCGG-------GACaCGCGCGA-----------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 12824 0.66 0.658269
Target:  5'- --aGCGCCGCCC---GCGCcGCUcCGGa -3'
miRNA:   3'- ucaUGCGGCGGGacaCGCG-CGA-GCCg -5'
23583 3' -61.3 NC_005261.1 + 13289 0.66 0.628467
Target:  5'- cAGgGCGCCGgCaca-GCGCGCgCGGCg -3'
miRNA:   3'- -UCaUGCGGCgGgacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 108083 0.66 0.648344
Target:  5'- --gGCGCCGCUaaGgcgcGCGCGCUCcaccgcgucgcgGGCc -3'
miRNA:   3'- ucaUGCGGCGGgaCa---CGCGCGAG------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.