miRNA display CGI


Results 1 - 20 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 134644 0.66 0.638408
Target:  5'- --gGCGCgGCCCgcgacgcgGUggaGCGCGCgcgccuuagCGGCg -3'
miRNA:   3'- ucaUGCGgCGGGa-------CA---CGCGCGa--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 13289 0.66 0.628467
Target:  5'- cAGgGCGCCGgCaca-GCGCGCgCGGCg -3'
miRNA:   3'- -UCaUGCGGCgGgacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 125173 0.66 0.648344
Target:  5'- --gACG-CGCCCggcagGgGCGCGCgCGGCc -3'
miRNA:   3'- ucaUGCgGCGGGa----CaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 133776 0.66 0.628467
Target:  5'- cGGgcCGCCGCCgCUGgaggGCcCGCUgcugacgcccucCGGCg -3'
miRNA:   3'- -UCauGCGGCGG-GACa---CGcGCGA------------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 77153 0.66 0.648344
Target:  5'- ----aGCUGCCC-GUGaGCGC-CGGCa -3'
miRNA:   3'- ucaugCGGCGGGaCACgCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 83894 0.66 0.628467
Target:  5'- ----gGCCaucgaCCUGUaCGCGCUCGGCc -3'
miRNA:   3'- ucaugCGGcg---GGACAcGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 98360 0.66 0.638408
Target:  5'- --cGCGCgGCCUgcuggccgUGUGCcuggGCGCcCGGCg -3'
miRNA:   3'- ucaUGCGgCGGG--------ACACG----CGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 122452 0.66 0.638408
Target:  5'- cGGgcgGCGCCcgccagcgGCCUUGUGUaucgcggcgagGCGgUCGGCc -3'
miRNA:   3'- -UCa--UGCGG--------CGGGACACG-----------CGCgAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 47356 0.66 0.638408
Target:  5'- ---cCGUCGCCCa--GCGCGCagaCGGCg -3'
miRNA:   3'- ucauGCGGCGGGacaCGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 5594 0.66 0.638408
Target:  5'- aGGgcCGCCGCgCCc--GCGUcCUCGGCg -3'
miRNA:   3'- -UCauGCGGCG-GGacaCGCGcGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 128128 0.66 0.648344
Target:  5'- uGU-CGCCGCCgCUGccgGgGCGCggCGGg -3'
miRNA:   3'- uCAuGCGGCGG-GACa--CgCGCGa-GCCg -5'
23583 3' -61.3 NC_005261.1 + 36345 0.66 0.638408
Target:  5'- gAGcGCGCgcggcugggCGCCCUGcGCGCGgaCGuGCu -3'
miRNA:   3'- -UCaUGCG---------GCGGGACaCGCGCgaGC-CG- -5'
23583 3' -61.3 NC_005261.1 + 37524 0.66 0.628467
Target:  5'- cGgcCGCgGCUCgGgcgGCGCGCgccgCGGCc -3'
miRNA:   3'- uCauGCGgCGGGaCa--CGCGCGa---GCCG- -5'
23583 3' -61.3 NC_005261.1 + 70783 0.66 0.638408
Target:  5'- cGUGCgggcggaccgGCUGCCCUuUGgGCGCU-GGCc -3'
miRNA:   3'- uCAUG----------CGGCGGGAcACgCGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 15301 0.66 0.628467
Target:  5'- gAGcGCGCgGCC----GCGCuGCUCGGCg -3'
miRNA:   3'- -UCaUGCGgCGGgacaCGCG-CGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 117737 0.66 0.628467
Target:  5'- ----aGCCgGCCCgcUGUcaGCGCUCGGCu -3'
miRNA:   3'- ucaugCGG-CGGGacACG--CGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 58109 0.66 0.632443
Target:  5'- --gGCGCCGCCgCUGccGCGgCGCccaagccgguaccgCGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GACa-CGC-GCGa-------------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 99860 0.66 0.638408
Target:  5'- aGGUGCcgcuucccgGCCGCCCcaaagGCcCGCUgGGCg -3'
miRNA:   3'- -UCAUG---------CGGCGGGaca--CGcGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 91149 0.66 0.638408
Target:  5'- --gGC-CCGCCUUcggcGUGCacgcguaccacGCGCUCGGCc -3'
miRNA:   3'- ucaUGcGGCGGGA----CACG-----------CGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 135849 0.66 0.628467
Target:  5'- ---uCGCCGCCa---GCGCGCcgcugCGGCg -3'
miRNA:   3'- ucauGCGGCGGgacaCGCGCGa----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.