Results 1 - 20 of 549 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23583 | 3' | -61.3 | NC_005261.1 | + | 126 | 0.73 | 0.278889 |
Target: 5'- --gGCGCCGCCCcugGUGCuCGCggGGCu -3' miRNA: 3'- ucaUGCGGCGGGa--CACGcGCGagCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 206 | 0.68 | 0.511247 |
Target: 5'- cGGUGCcgccGCCGCCCcugGUGCuCGCg-GGCc -3' miRNA: 3'- -UCAUG----CGGCGGGa--CACGcGCGagCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 1156 | 0.67 | 0.598687 |
Target: 5'- -cUGCGCCGCCauggGUGCccGCGcCUCcGCg -3' miRNA: 3'- ucAUGCGGCGGga--CACG--CGC-GAGcCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 1211 | 0.69 | 0.501828 |
Target: 5'- --gACGCCGUUCUGcugGcCGCGCUcucCGGCc -3' miRNA: 3'- ucaUGCGGCGGGACa--C-GCGCGA---GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 1613 | 0.7 | 0.420953 |
Target: 5'- ---cCGCCGCCCUcgGCGCGCgCGcGCc -3' miRNA: 3'- ucauGCGGCGGGAcaCGCGCGaGC-CG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 1905 | 0.67 | 0.598687 |
Target: 5'- --cGCGCCGCUCaG-GCcaGCGCgCGGCg -3' miRNA: 3'- ucaUGCGGCGGGaCaCG--CGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 1968 | 0.69 | 0.483226 |
Target: 5'- cGUGCGCCuGCCCgacgGcCGgGCcaUCGGCg -3' miRNA: 3'- uCAUGCGG-CGGGaca-C-GCgCG--AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 2113 | 0.66 | 0.668173 |
Target: 5'- --aGCaGCaCGCCCUGcgcgccgaGCGCGCUcacgucCGGCg -3' miRNA: 3'- ucaUG-CG-GCGGGACa-------CGCGCGA------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 2350 | 0.67 | 0.607607 |
Target: 5'- cGUGCuGCCGCaggccugCUUGUGCGUGUccaaGGCg -3' miRNA: 3'- uCAUG-CGGCG-------GGACACGCGCGag--CCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 2375 | 0.73 | 0.266377 |
Target: 5'- --cGCGCCGCCgCaGcgGCGCGCUggCGGCg -3' miRNA: 3'- ucaUGCGGCGG-GaCa-CGCGCGA--GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 2536 | 0.7 | 0.404066 |
Target: 5'- cAGUAgGCCGCCagcgccGCgGCGCUgGGCg -3' miRNA: 3'- -UCAUgCGGCGGgaca--CG-CGCGAgCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 2670 | 0.69 | 0.464961 |
Target: 5'- ---cCGCCGCgCUGgggacccggcgGCGCGC-CGGCu -3' miRNA: 3'- ucauGCGGCGgGACa----------CGCGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 3020 | 0.69 | 0.501828 |
Target: 5'- cGgcCGUgGCCCUcUGCGcCGCcUCGGCc -3' miRNA: 3'- uCauGCGgCGGGAcACGC-GCG-AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 3347 | 0.72 | 0.333604 |
Target: 5'- --cGCGgCGCCCg--GCGCGC-CGGCc -3' miRNA: 3'- ucaUGCgGCGGGacaCGCGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 3533 | 0.69 | 0.464961 |
Target: 5'- --gGCgGCCGCCUcG-GCGCGCagcgCGGCg -3' miRNA: 3'- ucaUG-CGGCGGGaCaCGCGCGa---GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 3566 | 0.66 | 0.648344 |
Target: 5'- --gGCGCCGCUaaGgcgcGCGCGCUCcaccgcgucgcgGGCc -3' miRNA: 3'- ucaUGCGGCGGgaCa---CGCGCGAG------------CCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 3642 | 0.69 | 0.50089 |
Target: 5'- gGGUGCGCCGCUagcgcguCUGgaGCGCagGCcgCGGCc -3' miRNA: 3'- -UCAUGCGGCGG-------GACa-CGCG--CGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 3861 | 0.69 | 0.505587 |
Target: 5'- --gGCGCCGCgCggccggcgagcacgGcGCGCaGCUCGGCg -3' miRNA: 3'- ucaUGCGGCGgGa-------------CaCGCG-CGAGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 3872 | 0.72 | 0.305308 |
Target: 5'- --gGCGCCGCCCcccGCGCGg-CGGCg -3' miRNA: 3'- ucaUGCGGCGGGacaCGCGCgaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 3981 | 0.7 | 0.420953 |
Target: 5'- gGGUACGCgGCCCgcagggcgcGUGCGCcacgccgacGCUgcCGGCc -3' miRNA: 3'- -UCAUGCGgCGGGa--------CACGCG---------CGA--GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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