miRNA display CGI


Results 1 - 20 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 126 0.73 0.278889
Target:  5'- --gGCGCCGCCCcugGUGCuCGCggGGCu -3'
miRNA:   3'- ucaUGCGGCGGGa--CACGcGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 206 0.68 0.511247
Target:  5'- cGGUGCcgccGCCGCCCcugGUGCuCGCg-GGCc -3'
miRNA:   3'- -UCAUG----CGGCGGGa--CACGcGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 1156 0.67 0.598687
Target:  5'- -cUGCGCCGCCauggGUGCccGCGcCUCcGCg -3'
miRNA:   3'- ucAUGCGGCGGga--CACG--CGC-GAGcCG- -5'
23583 3' -61.3 NC_005261.1 + 1211 0.69 0.501828
Target:  5'- --gACGCCGUUCUGcugGcCGCGCUcucCGGCc -3'
miRNA:   3'- ucaUGCGGCGGGACa--C-GCGCGA---GCCG- -5'
23583 3' -61.3 NC_005261.1 + 1613 0.7 0.420953
Target:  5'- ---cCGCCGCCCUcgGCGCGCgCGcGCc -3'
miRNA:   3'- ucauGCGGCGGGAcaCGCGCGaGC-CG- -5'
23583 3' -61.3 NC_005261.1 + 1905 0.67 0.598687
Target:  5'- --cGCGCCGCUCaG-GCcaGCGCgCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGaCaCG--CGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 1968 0.69 0.483226
Target:  5'- cGUGCGCCuGCCCgacgGcCGgGCcaUCGGCg -3'
miRNA:   3'- uCAUGCGG-CGGGaca-C-GCgCG--AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 2113 0.66 0.668173
Target:  5'- --aGCaGCaCGCCCUGcgcgccgaGCGCGCUcacgucCGGCg -3'
miRNA:   3'- ucaUG-CG-GCGGGACa-------CGCGCGA------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 2350 0.67 0.607607
Target:  5'- cGUGCuGCCGCaggccugCUUGUGCGUGUccaaGGCg -3'
miRNA:   3'- uCAUG-CGGCG-------GGACACGCGCGag--CCG- -5'
23583 3' -61.3 NC_005261.1 + 2375 0.73 0.266377
Target:  5'- --cGCGCCGCCgCaGcgGCGCGCUggCGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GaCa-CGCGCGA--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 2536 0.7 0.404066
Target:  5'- cAGUAgGCCGCCagcgccGCgGCGCUgGGCg -3'
miRNA:   3'- -UCAUgCGGCGGgaca--CG-CGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 2670 0.69 0.464961
Target:  5'- ---cCGCCGCgCUGgggacccggcgGCGCGC-CGGCu -3'
miRNA:   3'- ucauGCGGCGgGACa----------CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 3020 0.69 0.501828
Target:  5'- cGgcCGUgGCCCUcUGCGcCGCcUCGGCc -3'
miRNA:   3'- uCauGCGgCGGGAcACGC-GCG-AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 3347 0.72 0.333604
Target:  5'- --cGCGgCGCCCg--GCGCGC-CGGCc -3'
miRNA:   3'- ucaUGCgGCGGGacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 3533 0.69 0.464961
Target:  5'- --gGCgGCCGCCUcG-GCGCGCagcgCGGCg -3'
miRNA:   3'- ucaUG-CGGCGGGaCaCGCGCGa---GCCG- -5'
23583 3' -61.3 NC_005261.1 + 3566 0.66 0.648344
Target:  5'- --gGCGCCGCUaaGgcgcGCGCGCUCcaccgcgucgcgGGCc -3'
miRNA:   3'- ucaUGCGGCGGgaCa---CGCGCGAG------------CCG- -5'
23583 3' -61.3 NC_005261.1 + 3642 0.69 0.50089
Target:  5'- gGGUGCGCCGCUagcgcguCUGgaGCGCagGCcgCGGCc -3'
miRNA:   3'- -UCAUGCGGCGG-------GACa-CGCG--CGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 3861 0.69 0.505587
Target:  5'- --gGCGCCGCgCggccggcgagcacgGcGCGCaGCUCGGCg -3'
miRNA:   3'- ucaUGCGGCGgGa-------------CaCGCG-CGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 3872 0.72 0.305308
Target:  5'- --gGCGCCGCCCcccGCGCGg-CGGCg -3'
miRNA:   3'- ucaUGCGGCGGGacaCGCGCgaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 3981 0.7 0.420953
Target:  5'- gGGUACGCgGCCCgcagggcgcGUGCGCcacgccgacGCUgcCGGCc -3'
miRNA:   3'- -UCAUGCGgCGGGa--------CACGCG---------CGA--GCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.