miRNA display CGI


Results 21 - 40 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 4390 0.69 0.455965
Target:  5'- --cGCGCCGgCCacgGCGCGCacgCGGCc -3'
miRNA:   3'- ucaUGCGGCgGGacaCGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 4512 0.67 0.578939
Target:  5'- cAGU-CGCgCGCCCgc-GCGgGCgccgCGGCg -3'
miRNA:   3'- -UCAuGCG-GCGGGacaCGCgCGa---GCCG- -5'
23583 3' -61.3 NC_005261.1 + 4845 0.68 0.559334
Target:  5'- uGGgcCGCgCGCCCgUGggccGCGCGCa-GGCa -3'
miRNA:   3'- -UCauGCG-GCGGG-ACa---CGCGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 4895 0.68 0.511247
Target:  5'- --aGCGCCGCgCgc-GCGUGC-CGGCa -3'
miRNA:   3'- ucaUGCGGCGgGacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 4955 0.67 0.588798
Target:  5'- gAGgcggGCGCCggcGCCCUGguacucGCGCGCcgcugCGGg -3'
miRNA:   3'- -UCa---UGCGG---CGGGACa-----CGCGCGa----GCCg -5'
23583 3' -61.3 NC_005261.1 + 4997 0.67 0.608599
Target:  5'- uAGUGCuCCGCCaUGUaGgGCcccaGCUCGGCc -3'
miRNA:   3'- -UCAUGcGGCGGgACA-CgCG----CGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 5185 0.69 0.501828
Target:  5'- --aACGCCGCgCagcacGUGCGUGCgcggUGGCg -3'
miRNA:   3'- ucaUGCGGCGgGa----CACGCGCGa---GCCG- -5'
23583 3' -61.3 NC_005261.1 + 5335 0.71 0.371607
Target:  5'- --gGCGCCGCCCgcgGCGC-C-CGGCu -3'
miRNA:   3'- ucaUGCGGCGGGacaCGCGcGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 5594 0.66 0.638408
Target:  5'- aGGgcCGCCGCgCCc--GCGUcCUCGGCg -3'
miRNA:   3'- -UCauGCGGCG-GGacaCGCGcGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 5686 0.68 0.53992
Target:  5'- -cUGCGCCucGCCCUc-GCGCGCgagGGCg -3'
miRNA:   3'- ucAUGCGG--CGGGAcaCGCGCGag-CCG- -5'
23583 3' -61.3 NC_005261.1 + 6069 0.68 0.520738
Target:  5'- --cGCGCUGCCUgcagcgGcgGCGCGCUCGa- -3'
miRNA:   3'- ucaUGCGGCGGGa-----Ca-CGCGCGAGCcg -5'
23583 3' -61.3 NC_005261.1 + 6318 0.68 0.511247
Target:  5'- --cGCGCCaaaaaGCCCguccagcggGUGCGCGCcgucgcgugCGGCg -3'
miRNA:   3'- ucaUGCGG-----CGGGa--------CACGCGCGa--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 6520 0.67 0.594728
Target:  5'- aAGcGCGCCGCCUggcucucgaggcgGUccagcgccGCGCGCagGGCg -3'
miRNA:   3'- -UCaUGCGGCGGGa------------CA--------CGCGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 7014 0.66 0.668173
Target:  5'- --cGCGCgGCCaCguacgcggGCGCGC-CGGCg -3'
miRNA:   3'- ucaUGCGgCGG-Gaca-----CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 7199 0.76 0.182106
Target:  5'- --gGCGUCGCCg---GCGCGCUCGGCc -3'
miRNA:   3'- ucaUGCGGCGGgacaCGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 7439 0.67 0.618528
Target:  5'- --gGCGUCGUCCgcgGUGCggccaGCGCggGGCg -3'
miRNA:   3'- ucaUGCGGCGGGa--CACG-----CGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 7603 0.66 0.648344
Target:  5'- --cACGCgCGCCCc--GCGCGCUguugaaGGCg -3'
miRNA:   3'- ucaUGCG-GCGGGacaCGCGCGAg-----CCG- -5'
23583 3' -61.3 NC_005261.1 + 8071 0.72 0.332874
Target:  5'- --gGCGCCGCugacgguggaggaCgUG-GUGCGCUCGGCg -3'
miRNA:   3'- ucaUGCGGCG-------------GgACaCGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 8389 0.69 0.492487
Target:  5'- cGU-CGCgGUgCUGgagcGCGCGCUgGGCa -3'
miRNA:   3'- uCAuGCGgCGgGACa---CGCGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 9812 0.67 0.578939
Target:  5'- uGGUGCGCgGCCUUGaccccuUGCuggaCGCgaugCGGCg -3'
miRNA:   3'- -UCAUGCGgCGGGAC------ACGc---GCGa---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.