miRNA display CGI


Results 21 - 40 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 90548 0.76 0.186597
Target:  5'- --gGCGCCGCgggcggCC-GUGCuGCGCUCGGCg -3'
miRNA:   3'- ucaUGCGGCG------GGaCACG-CGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 31802 0.76 0.190723
Target:  5'- cAGUGCGCCGCgcgcuggCCUGagcgGCGCGCgcuGGCg -3'
miRNA:   3'- -UCAUGCGGCG-------GGACa---CGCGCGag-CCG- -5'
23583 3' -61.3 NC_005261.1 + 136319 0.76 0.190723
Target:  5'- cAGUGCGCCGCgcgcuggCCUGagcgGCGCGCgcuGGCg -3'
miRNA:   3'- -UCAUGCGGCG-------GGACa---CGCGCGag-CCG- -5'
23583 3' -61.3 NC_005261.1 + 102445 0.76 0.193049
Target:  5'- cGGcGCGCCGCCCggccucgGCGCGCaggcgccggaccuccUCGGCg -3'
miRNA:   3'- -UCaUGCGGCGGGaca----CGCGCG---------------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 62342 0.76 0.195873
Target:  5'- aGGUugGCGUCGCCgCUGcGCGCGCccaCGGCg -3'
miRNA:   3'- -UCA--UGCGGCGG-GACaCGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 19383 0.75 0.200661
Target:  5'- gGGcGCGCCGCCCUccGCGCcGCagagCGGCa -3'
miRNA:   3'- -UCaUGCGGCGGGAcaCGCG-CGa---GCCG- -5'
23583 3' -61.3 NC_005261.1 + 88986 0.75 0.202604
Target:  5'- --gACGCCGCCgcggcggcggccgacCUGcGCGCGCUgGGCg -3'
miRNA:   3'- ucaUGCGGCGG---------------GACaCGCGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 17841 0.75 0.20555
Target:  5'- --gACGCCGCUCUGcucgGUGCGCgagggcgCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGACa---CGCGCGa------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 117356 0.75 0.207534
Target:  5'- --gGCGCCGCCCgcaaggccgcccuccUGgagGCGCGCugcuUCGGCg -3'
miRNA:   3'- ucaUGCGGCGGG---------------ACa--CGCGCG----AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 33077 0.75 0.210038
Target:  5'- --gACGCCGCCCUcGagccgcgaggaccUGCGCGCgcCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGA-C-------------ACGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 118496 0.75 0.215638
Target:  5'- --gGCGCUGCggacCCUG-GCGcCGCUCGGCg -3'
miRNA:   3'- ucaUGCGGCG----GGACaCGC-GCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 44403 0.75 0.219267
Target:  5'- --gGCGCCGCCCggcggcugcggcggUGgcggcgGCGCGCgggCGGCg -3'
miRNA:   3'- ucaUGCGGCGGG--------------ACa-----CGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 45208 0.75 0.220839
Target:  5'- uGUGCGCgGgCUUGUGgGCGCUCGcGUa -3'
miRNA:   3'- uCAUGCGgCgGGACACgCGCGAGC-CG- -5'
23583 3' -61.3 NC_005261.1 + 109028 0.74 0.231562
Target:  5'- --aACGCCGCCgUG-GCGCGCagccgcgCGGCc -3'
miRNA:   3'- ucaUGCGGCGGgACaCGCGCGa------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 131678 0.74 0.237086
Target:  5'- gGGUGCGaCCGCCC--UGCGCGC--GGCg -3'
miRNA:   3'- -UCAUGC-GGCGGGacACGCGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 27287 0.74 0.237086
Target:  5'- gGGUGgGCCGCCg-G-GCgGCGCUCGGUg -3'
miRNA:   3'- -UCAUgCGGCGGgaCaCG-CGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 45978 0.74 0.242721
Target:  5'- gAGUACcggGCCuUCCUGgccuccauccGCGCGCUCGGCg -3'
miRNA:   3'- -UCAUG---CGGcGGGACa---------CGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 35038 0.74 0.248466
Target:  5'- uGGcGCGCCGCCCUaacGgcgGcCGCGCggCGGCg -3'
miRNA:   3'- -UCaUGCGGCGGGA---Ca--C-GCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 53524 0.74 0.248466
Target:  5'- --cGCGCCGCUUUGUgcucgcgugcccGCGCGC-CGGCu -3'
miRNA:   3'- ucaUGCGGCGGGACA------------CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 37499 0.74 0.248466
Target:  5'- --cGCGCCGCCgCgc-GCGCGCgCGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GacaCGCGCGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.