miRNA display CGI


Results 21 - 40 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 66012 0.66 0.668173
Target:  5'- -uUACGCgCGCCaccgccgGCGCGUcguagUCGGCg -3'
miRNA:   3'- ucAUGCG-GCGGgaca---CGCGCG-----AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 105932 0.66 0.668173
Target:  5'- --cACGCCgcGCCCUccgcgaGCGCGCcgucgauggccUCGGCg -3'
miRNA:   3'- ucaUGCGG--CGGGAca----CGCGCG-----------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 125904 0.66 0.668173
Target:  5'- --cGCGCCGgCCaa-GCGCGCgcccgcCGGCu -3'
miRNA:   3'- ucaUGCGGCgGGacaCGCGCGa-----GCCG- -5'
23583 3' -61.3 NC_005261.1 + 20239 0.66 0.668173
Target:  5'- ----aGCCGCuCCgccGCGCGCUCcaugGGCg -3'
miRNA:   3'- ucaugCGGCG-GGacaCGCGCGAG----CCG- -5'
23583 3' -61.3 NC_005261.1 + 53343 0.66 0.668173
Target:  5'- -cUGCGcCCGCCCccgcCGCGCuuUCGGCc -3'
miRNA:   3'- ucAUGC-GGCGGGacacGCGCG--AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 57578 0.66 0.65926
Target:  5'- --gGCGCCGCgUUGaGCGCGUcgaugugccaccuggCGGCg -3'
miRNA:   3'- ucaUGCGGCGgGACaCGCGCGa--------------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 127344 0.66 0.658269
Target:  5'- ---cCGCCGCCgUUG-GCGCcggGCUCGGg -3'
miRNA:   3'- ucauGCGGCGG-GACaCGCG---CGAGCCg -5'
23583 3' -61.3 NC_005261.1 + 12824 0.66 0.658269
Target:  5'- --aGCGCCGCCC---GCGCcGCUcCGGa -3'
miRNA:   3'- ucaUGCGGCGGGacaCGCG-CGA-GCCg -5'
23583 3' -61.3 NC_005261.1 + 48315 0.66 0.658269
Target:  5'- gGGcGCGUCggGCCCgGgcucggggGCGCGCgCGGCg -3'
miRNA:   3'- -UCaUGCGG--CGGGaCa-------CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 76932 0.66 0.658269
Target:  5'- aGGUGgGCgGCagUGguagaaGCGCGuCUCGGCg -3'
miRNA:   3'- -UCAUgCGgCGggACa-----CGCGC-GAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 15334 0.66 0.658269
Target:  5'- --aACGCCGUCCcGgagGCGCugguucugucgGaCUCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGaCa--CGCG-----------C-GAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 64050 0.66 0.658269
Target:  5'- -cUGCGCCGCgUgGUGCGCcacCGGCu -3'
miRNA:   3'- ucAUGCGGCGgGaCACGCGcgaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 52183 0.66 0.658269
Target:  5'- --cGCGCCGCCgUGgagaaCGUGCUC-GCa -3'
miRNA:   3'- ucaUGCGGCGGgACac---GCGCGAGcCG- -5'
23583 3' -61.3 NC_005261.1 + 31921 0.66 0.658269
Target:  5'- cGGgGCGCCGCCgCUGgGCucUGCcgCGGCg -3'
miRNA:   3'- -UCaUGCGGCGG-GACaCGc-GCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 27699 0.66 0.658269
Target:  5'- cGUGCGCgCGCCCUccUGCGCcccGCagacgaCGGCc -3'
miRNA:   3'- uCAUGCG-GCGGGAc-ACGCG---CGa-----GCCG- -5'
23583 3' -61.3 NC_005261.1 + 94633 0.66 0.658269
Target:  5'- --gGCGCCGUCgUcgGCGCGCgcgaacaugCGGCu -3'
miRNA:   3'- ucaUGCGGCGGgAcaCGCGCGa--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 81477 0.66 0.658269
Target:  5'- --cACGCCGCCCaGaGCaGgGCcgCGGCu -3'
miRNA:   3'- ucaUGCGGCGGGaCaCG-CgCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 103282 0.66 0.658269
Target:  5'- cAGgcCGCCggGCCCggGU-CGCGC-CGGCc -3'
miRNA:   3'- -UCauGCGG--CGGGa-CAcGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 87492 0.66 0.658269
Target:  5'- --cGCgGCCGUgCUG-GCGCGCa-GGCg -3'
miRNA:   3'- ucaUG-CGGCGgGACaCGCGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 68662 0.66 0.658269
Target:  5'- ---cCGCCGCCC---GCGCcGC-CGGCg -3'
miRNA:   3'- ucauGCGGCGGGacaCGCG-CGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.