miRNA display CGI


Results 1 - 20 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 111908 1.1 0.000748
Target:  5'- gAGUACGCCGCCCUGUGCGCGCUCGGCc -3'
miRNA:   3'- -UCAUGCGGCGGGACACGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 85106 0.87 0.029863
Target:  5'- cGUACGCCGCCCUGUuggcgGCGCGCagcgccgCGGCg -3'
miRNA:   3'- uCAUGCGGCGGGACA-----CGCGCGa------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 90843 0.81 0.078895
Target:  5'- gGGgcgGCGCCGCCCcgacgguUGUGCGCGCgcuggugcccgUCGGCu -3'
miRNA:   3'- -UCa--UGCGGCGGG-------ACACGCGCG-----------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 76907 0.79 0.107714
Target:  5'- --cACGUCGCgCUGUGCGUGCUgGGCc -3'
miRNA:   3'- ucaUGCGGCGgGACACGCGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 14130 0.79 0.122305
Target:  5'- cGGUGC-CgGCCCUGUGCGCGCgcuacgCGGg -3'
miRNA:   3'- -UCAUGcGgCGGGACACGCGCGa-----GCCg -5'
23583 3' -61.3 NC_005261.1 + 134497 0.79 0.122305
Target:  5'- cGGUGCGCCGCCg---GCGCGUcCGGCa -3'
miRNA:   3'- -UCAUGCGGCGGgacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 29979 0.79 0.122305
Target:  5'- cGGUGCGCCGCCg---GCGCGUcCGGCa -3'
miRNA:   3'- -UCAUGCGGCGGgacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 85524 0.78 0.135279
Target:  5'- aGGU-CGCCGUCCaUGUcGCGCGCgggCGGCu -3'
miRNA:   3'- -UCAuGCGGCGGG-ACA-CGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 58937 0.77 0.145828
Target:  5'- --cACGCCGCCCggaa-GCGCUCGGCc -3'
miRNA:   3'- ucaUGCGGCGGGacacgCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 84366 0.77 0.153272
Target:  5'- --gGCGCCGCCC---GCGgGCUCGGCc -3'
miRNA:   3'- ucaUGCGGCGGGacaCGCgCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 71486 0.76 0.169202
Target:  5'- cGGUGCGCgGCggCCagGUGCGCGCgaaagUCGGCg -3'
miRNA:   3'- -UCAUGCGgCG--GGa-CACGCGCG-----AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 31579 0.76 0.169202
Target:  5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCGGCg-GgACaCGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 75158 0.76 0.169202
Target:  5'- cGUAC-CCGCCgCUGUGCGCcaGCgacgCGGCg -3'
miRNA:   3'- uCAUGcGGCGG-GACACGCG--CGa---GCCG- -5'
23583 3' -61.3 NC_005261.1 + 136096 0.76 0.169202
Target:  5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCGGCg-GgACaCGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 52965 0.76 0.17341
Target:  5'- --aGCGCCGCgCCgGUGCgGCGC-CGGCa -3'
miRNA:   3'- ucaUGCGGCG-GGaCACG-CGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 29502 0.76 0.17341
Target:  5'- --gGCGCCGCCgCUGgcccGCGCGCUCuucgccguGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GACa---CGCGCGAG--------CCG- -5'
23583 3' -61.3 NC_005261.1 + 35244 0.76 0.177711
Target:  5'- --gGCgGCCGCCgUGUcGCGCGCggCGGCg -3'
miRNA:   3'- ucaUG-CGGCGGgACA-CGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 110979 0.76 0.177711
Target:  5'- uGUACGCCGCCUUcGUGCGC-CUgGGg -3'
miRNA:   3'- uCAUGCGGCGGGA-CACGCGcGAgCCg -5'
23583 3' -61.3 NC_005261.1 + 7199 0.76 0.182106
Target:  5'- --gGCGUCGCCg---GCGCGCUCGGCc -3'
miRNA:   3'- ucaUGCGGCGGgacaCGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 99925 0.76 0.182106
Target:  5'- --cGgGCCGCCC--UGCGCGCUCaGGCg -3'
miRNA:   3'- ucaUgCGGCGGGacACGCGCGAG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.