miRNA display CGI


Results 1 - 20 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 45978 0.74 0.242721
Target:  5'- gAGUACcggGCCuUCCUGgccuccauccGCGCGCUCGGCg -3'
miRNA:   3'- -UCAUG---CGGcGGGACa---------CGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 62342 0.76 0.195873
Target:  5'- aGGUugGCGUCGCCgCUGcGCGCGCccaCGGCg -3'
miRNA:   3'- -UCA--UGCGGCGG-GACaCGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 19383 0.75 0.200661
Target:  5'- gGGcGCGCCGCCCUccGCGCcGCagagCGGCa -3'
miRNA:   3'- -UCaUGCGGCGGGAcaCGCG-CGa---GCCG- -5'
23583 3' -61.3 NC_005261.1 + 88986 0.75 0.202604
Target:  5'- --gACGCCGCCgcggcggcggccgacCUGcGCGCGCUgGGCg -3'
miRNA:   3'- ucaUGCGGCGG---------------GACaCGCGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 17841 0.75 0.20555
Target:  5'- --gACGCCGCUCUGcucgGUGCGCgagggcgCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGACa---CGCGCGa------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 33077 0.75 0.210038
Target:  5'- --gACGCCGCCCUcGagccgcgaggaccUGCGCGCgcCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGA-C-------------ACGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 44403 0.75 0.219267
Target:  5'- --gGCGCCGCCCggcggcugcggcggUGgcggcgGCGCGCgggCGGCg -3'
miRNA:   3'- ucaUGCGGCGGG--------------ACa-----CGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 45208 0.75 0.220839
Target:  5'- uGUGCGCgGgCUUGUGgGCGCUCGcGUa -3'
miRNA:   3'- uCAUGCGgCgGGACACgCGCGAGC-CG- -5'
23583 3' -61.3 NC_005261.1 + 27287 0.74 0.237086
Target:  5'- gGGUGgGCCGCCg-G-GCgGCGCUCGGUg -3'
miRNA:   3'- -UCAUgCGGCGGgaCaCG-CGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 136319 0.76 0.190723
Target:  5'- cAGUGCGCCGCgcgcuggCCUGagcgGCGCGCgcuGGCg -3'
miRNA:   3'- -UCAUGCGGCG-------GGACa---CGCGCGag-CCG- -5'
23583 3' -61.3 NC_005261.1 + 90548 0.76 0.186597
Target:  5'- --gGCGCCGCgggcggCC-GUGCuGCGCUCGGCg -3'
miRNA:   3'- ucaUGCGGCG------GGaCACG-CGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 99925 0.76 0.182106
Target:  5'- --cGgGCCGCCC--UGCGCGCUCaGGCg -3'
miRNA:   3'- ucaUgCGGCGGGacACGCGCGAG-CCG- -5'
23583 3' -61.3 NC_005261.1 + 90843 0.81 0.078895
Target:  5'- gGGgcgGCGCCGCCCcgacgguUGUGCGCGCgcuggugcccgUCGGCu -3'
miRNA:   3'- -UCa--UGCGGCGGG-------ACACGCGCG-----------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 14130 0.79 0.122305
Target:  5'- cGGUGC-CgGCCCUGUGCGCGCgcuacgCGGg -3'
miRNA:   3'- -UCAUGcGgCGGGACACGCGCGa-----GCCg -5'
23583 3' -61.3 NC_005261.1 + 134497 0.79 0.122305
Target:  5'- cGGUGCGCCGCCg---GCGCGUcCGGCa -3'
miRNA:   3'- -UCAUGCGGCGGgacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 75158 0.76 0.169202
Target:  5'- cGUAC-CCGCCgCUGUGCGCcaGCgacgCGGCg -3'
miRNA:   3'- uCAUGcGGCGG-GACACGCG--CGa---GCCG- -5'
23583 3' -61.3 NC_005261.1 + 136096 0.76 0.169202
Target:  5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCGGCg-GgACaCGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 29502 0.76 0.17341
Target:  5'- --gGCGCCGCCgCUGgcccGCGCGCUCuucgccguGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GACa---CGCGCGAG--------CCG- -5'
23583 3' -61.3 NC_005261.1 + 35244 0.76 0.177711
Target:  5'- --gGCgGCCGCCgUGUcGCGCGCggCGGCg -3'
miRNA:   3'- ucaUG-CGGCGGgACA-CGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 7199 0.76 0.182106
Target:  5'- --gGCGUCGCCg---GCGCGCUCGGCc -3'
miRNA:   3'- ucaUGCGGCGGgacaCGCGCGAGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.