miRNA display CGI


Results 1 - 20 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 65644 0.66 0.67805
Target:  5'- ---cCGCCucucGCCuCUG-GCGCGCgcCGGCg -3'
miRNA:   3'- ucauGCGG----CGG-GACaCGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 94633 0.66 0.658269
Target:  5'- --gGCGCCGUCgUcgGCGCGCgcgaacaugCGGCu -3'
miRNA:   3'- ucaUGCGGCGGgAcaCGCGCGa--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 81477 0.66 0.658269
Target:  5'- --cACGCCGCCCaGaGCaGgGCcgCGGCu -3'
miRNA:   3'- ucaUGCGGCGGGaCaCG-CgCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 111908 1.1 0.000748
Target:  5'- gAGUACGCCGCCCUGUGCGCGCUCGGCc -3'
miRNA:   3'- -UCAUGCGGCGGGACACGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 53343 0.66 0.668173
Target:  5'- -cUGCGcCCGCCCccgcCGCGCuuUCGGCc -3'
miRNA:   3'- ucAUGC-GGCGGGacacGCGCG--AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 47281 0.66 0.668173
Target:  5'- aAGaGCGCCGCgugccaCUGUGCGagcacgaGCaUGGCg -3'
miRNA:   3'- -UCaUGCGGCGg-----GACACGCg------CGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 135746 0.66 0.668173
Target:  5'- uGGcGCGCCucaGCCgCgcgGUGCGCUcCGGCg -3'
miRNA:   3'- -UCaUGCGG---CGG-GacaCGCGCGA-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 133326 0.66 0.668173
Target:  5'- --cGCGCaGCuCCUGccggcacGCGCGCgCGGCg -3'
miRNA:   3'- ucaUGCGgCG-GGACa------CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 66012 0.66 0.668173
Target:  5'- -uUACGCgCGCCaccgccgGCGCGUcguagUCGGCg -3'
miRNA:   3'- ucAUGCG-GCGGgaca---CGCGCG-----AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 48315 0.66 0.658269
Target:  5'- gGGcGCGUCggGCCCgGgcucggggGCGCGCgCGGCg -3'
miRNA:   3'- -UCaUGCGG--CGGGaCa-------CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 2113 0.66 0.668173
Target:  5'- --aGCaGCaCGCCCUGcgcgccgaGCGCGCUcacgucCGGCg -3'
miRNA:   3'- ucaUG-CG-GCGGGACa-------CGCGCGA------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 105932 0.66 0.668173
Target:  5'- --cACGCCgcGCCCUccgcgaGCGCGCcgucgauggccUCGGCg -3'
miRNA:   3'- ucaUGCGG--CGGGAca----CGCGCG-----------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 50916 0.66 0.67805
Target:  5'- --gGCGCCGCCUcGccGgGCGCggGGCu -3'
miRNA:   3'- ucaUGCGGCGGGaCa-CgCGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 57578 0.66 0.65926
Target:  5'- --gGCGCCGCgUUGaGCGCGUcgaugugccaccuggCGGCg -3'
miRNA:   3'- ucaUGCGGCGgGACaCGCGCGa--------------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 106946 0.66 0.668173
Target:  5'- --cGCGCaccucgGCCCgg-GCGCGCuccgccUCGGCg -3'
miRNA:   3'- ucaUGCGg-----CGGGacaCGCGCG------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 127567 0.66 0.668173
Target:  5'- cGUGCGUCgGCCCgcaccaggGCGCcCUgGGCg -3'
miRNA:   3'- uCAUGCGG-CGGGaca-----CGCGcGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 68662 0.66 0.658269
Target:  5'- ---cCGCCGCCC---GCGCcGC-CGGCg -3'
miRNA:   3'- ucauGCGGCGGGacaCGCG-CGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 87492 0.66 0.658269
Target:  5'- --cGCgGCCGUgCUG-GCGCGCa-GGCg -3'
miRNA:   3'- ucaUG-CGGCGgGACaCGCGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 87582 0.66 0.668173
Target:  5'- --cGCGCCGCCCaggccgGUGgucuugGUGC-CGGCg -3'
miRNA:   3'- ucaUGCGGCGGGa-----CACg-----CGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 38178 0.66 0.668173
Target:  5'- cGgcUGCCuggaGgCCUGgGCGCGCcgCGGCg -3'
miRNA:   3'- uCauGCGG----CgGGACaCGCGCGa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.