Results 1 - 20 of 549 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23583 | 3' | -61.3 | NC_005261.1 | + | 68662 | 0.66 | 0.658269 |
Target: 5'- ---cCGCCGCCC---GCGCcGC-CGGCg -3' miRNA: 3'- ucauGCGGCGGGacaCGCG-CGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 65644 | 0.66 | 0.67805 |
Target: 5'- ---cCGCCucucGCCuCUG-GCGCGCgcCGGCg -3' miRNA: 3'- ucauGCGG----CGG-GACaCGCGCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 50916 | 0.66 | 0.67805 |
Target: 5'- --gGCGCCGCCUcGccGgGCGCggGGCu -3' miRNA: 3'- ucaUGCGGCGGGaCa-CgCGCGagCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 127567 | 0.66 | 0.668173 |
Target: 5'- cGUGCGUCgGCCCgcaccaggGCGCcCUgGGCg -3' miRNA: 3'- uCAUGCGG-CGGGaca-----CGCGcGAgCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 105932 | 0.66 | 0.668173 |
Target: 5'- --cACGCCgcGCCCUccgcgaGCGCGCcgucgauggccUCGGCg -3' miRNA: 3'- ucaUGCGG--CGGGAca----CGCGCG-----------AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 106946 | 0.66 | 0.668173 |
Target: 5'- --cGCGCaccucgGCCCgg-GCGCGCuccgccUCGGCg -3' miRNA: 3'- ucaUGCGg-----CGGGacaCGCGCG------AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 38178 | 0.66 | 0.668173 |
Target: 5'- cGgcUGCCuggaGgCCUGgGCGCGCcgCGGCg -3' miRNA: 3'- uCauGCGG----CgGGACaCGCGCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 133326 | 0.66 | 0.668173 |
Target: 5'- --cGCGCaGCuCCUGccggcacGCGCGCgCGGCg -3' miRNA: 3'- ucaUGCGgCG-GGACa------CGCGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 57578 | 0.66 | 0.65926 |
Target: 5'- --gGCGCCGCgUUGaGCGCGUcgaugugccaccuggCGGCg -3' miRNA: 3'- ucaUGCGGCGgGACaCGCGCGa--------------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 87492 | 0.66 | 0.658269 |
Target: 5'- --cGCgGCCGUgCUG-GCGCGCa-GGCg -3' miRNA: 3'- ucaUG-CGGCGgGACaCGCGCGagCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 111908 | 1.1 | 0.000748 |
Target: 5'- gAGUACGCCGCCCUGUGCGCGCUCGGCc -3' miRNA: 3'- -UCAUGCGGCGGGACACGCGCGAGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 53343 | 0.66 | 0.668173 |
Target: 5'- -cUGCGcCCGCCCccgcCGCGCuuUCGGCc -3' miRNA: 3'- ucAUGC-GGCGGGacacGCGCG--AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 87582 | 0.66 | 0.668173 |
Target: 5'- --cGCGCCGCCCaggccgGUGgucuugGUGC-CGGCg -3' miRNA: 3'- ucaUGCGGCGGGa-----CACg-----CGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 20239 | 0.66 | 0.668173 |
Target: 5'- ----aGCCGCuCCgccGCGCGCUCcaugGGCg -3' miRNA: 3'- ucaugCGGCG-GGacaCGCGCGAG----CCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 2113 | 0.66 | 0.668173 |
Target: 5'- --aGCaGCaCGCCCUGcgcgccgaGCGCGCUcacgucCGGCg -3' miRNA: 3'- ucaUG-CG-GCGGGACa-------CGCGCGA------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 47281 | 0.66 | 0.668173 |
Target: 5'- aAGaGCGCCGCgugccaCUGUGCGagcacgaGCaUGGCg -3' miRNA: 3'- -UCaUGCGGCGg-----GACACGCg------CGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 94633 | 0.66 | 0.658269 |
Target: 5'- --gGCGCCGUCgUcgGCGCGCgcgaacaugCGGCu -3' miRNA: 3'- ucaUGCGGCGGgAcaCGCGCGa--------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 81477 | 0.66 | 0.658269 |
Target: 5'- --cACGCCGCCCaGaGCaGgGCcgCGGCu -3' miRNA: 3'- ucaUGCGGCGGGaCaCG-CgCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 135746 | 0.66 | 0.668173 |
Target: 5'- uGGcGCGCCucaGCCgCgcgGUGCGCUcCGGCg -3' miRNA: 3'- -UCaUGCGG---CGG-GacaCGCGCGA-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 66012 | 0.66 | 0.668173 |
Target: 5'- -uUACGCgCGCCaccgccgGCGCGUcguagUCGGCg -3' miRNA: 3'- ucAUGCG-GCGGgaca---CGCGCG-----AGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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