Results 21 - 40 of 549 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23583 | 3' | -61.3 | NC_005261.1 | + | 22827 | 0.66 | 0.658269 |
Target: 5'- ---cCGCCGCCgUUG-GCGCcggGCUCGGg -3' miRNA: 3'- ucauGCGGCGG-GACaCGCG---CGAGCCg -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 81477 | 0.66 | 0.658269 |
Target: 5'- --cACGCCGCCCaGaGCaGgGCcgCGGCu -3' miRNA: 3'- ucaUGCGGCGGGaCaCG-CgCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 105932 | 0.66 | 0.668173 |
Target: 5'- --cACGCCgcGCCCUccgcgaGCGCGCcgucgauggccUCGGCg -3' miRNA: 3'- ucaUGCGG--CGGGAca----CGCGCG-----------AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 87582 | 0.66 | 0.668173 |
Target: 5'- --cGCGCCGCCCaggccgGUGgucuugGUGC-CGGCg -3' miRNA: 3'- ucaUGCGGCGGGa-----CACg-----CGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 47453 | 0.66 | 0.648344 |
Target: 5'- --gGCGCCcgGCCCgcuUGCGCggggGCUgGGCg -3' miRNA: 3'- ucaUGCGG--CGGGac-ACGCG----CGAgCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 66262 | 0.66 | 0.658269 |
Target: 5'- cAGcACGCCGUCCaccGgGCGCccgCGGCu -3' miRNA: 3'- -UCaUGCGGCGGGacaCgCGCGa--GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 94633 | 0.66 | 0.658269 |
Target: 5'- --gGCGCCGUCgUcgGCGCGCgcgaacaugCGGCu -3' miRNA: 3'- ucaUGCGGCGGgAcaCGCGCGa--------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 106946 | 0.66 | 0.668173 |
Target: 5'- --cGCGCaccucgGCCCgg-GCGCGCuccgccUCGGCg -3' miRNA: 3'- ucaUGCGg-----CGGGacaCGCGCG------AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 88772 | 0.66 | 0.658269 |
Target: 5'- -cUGCGCUccucgGCCCUG-GC-CGC-CGGCg -3' miRNA: 3'- ucAUGCGG-----CGGGACaCGcGCGaGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 50916 | 0.66 | 0.67805 |
Target: 5'- --gGCGCCGCCUcGccGgGCGCggGGCu -3' miRNA: 3'- ucaUGCGGCGGGaCa-CgCGCGagCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 87492 | 0.66 | 0.658269 |
Target: 5'- --cGCgGCCGUgCUG-GCGCGCa-GGCg -3' miRNA: 3'- ucaUG-CGGCGgGACaCGCGCGagCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 15150 | 0.66 | 0.658269 |
Target: 5'- ---cCGCCGUCCgcgguggggGUGgGCGUagCGGCg -3' miRNA: 3'- ucauGCGGCGGGa--------CACgCGCGa-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 57578 | 0.66 | 0.65926 |
Target: 5'- --gGCGCCGCgUUGaGCGCGUcgaugugccaccuggCGGCg -3' miRNA: 3'- ucaUGCGGCGgGACaCGCGCGa--------------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 66012 | 0.66 | 0.668173 |
Target: 5'- -uUACGCgCGCCaccgccgGCGCGUcguagUCGGCg -3' miRNA: 3'- ucAUGCG-GCGGgaca---CGCGCG-----AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 135746 | 0.66 | 0.668173 |
Target: 5'- uGGcGCGCCucaGCCgCgcgGUGCGCUcCGGCg -3' miRNA: 3'- -UCaUGCGG---CGG-GacaCGCGCGA-GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 53343 | 0.66 | 0.668173 |
Target: 5'- -cUGCGcCCGCCCccgcCGCGCuuUCGGCc -3' miRNA: 3'- ucAUGC-GGCGGGacacGCGCG--AGCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 23611 | 0.66 | 0.648344 |
Target: 5'- uGU-CGCCGCCgCUGccgGgGCGCggCGGg -3' miRNA: 3'- uCAuGCGGCGG-GACa--CgCGCGa-GCCg -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 44240 | 0.66 | 0.648344 |
Target: 5'- ----gGCCGCCCa--GCGCGCggccgacgccgCGGCg -3' miRNA: 3'- ucaugCGGCGGGacaCGCGCGa----------GCCG- -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 103876 | 0.66 | 0.648344 |
Target: 5'- gGGgcgGCGCCGCCggGcgGCGCGCcaagcCGGg -3' miRNA: 3'- -UCa--UGCGGCGGgaCa-CGCGCGa----GCCg -5' |
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23583 | 3' | -61.3 | NC_005261.1 | + | 107243 | 0.66 | 0.648344 |
Target: 5'- --cGCaGCCGCCCacccgcggGCGCGCg-GGCa -3' miRNA: 3'- ucaUG-CGGCGGGaca-----CGCGCGagCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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