miRNA display CGI


Results 41 - 60 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 10374 0.68 0.559334
Target:  5'- --cACGCgCGCgCUGcgccGCGCGCucgUCGGCu -3'
miRNA:   3'- ucaUGCG-GCGgGACa---CGCGCG---AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 10600 0.67 0.598687
Target:  5'- --gGCGCCGCCgCcGU-CGCGUcCGGCc -3'
miRNA:   3'- ucaUGCGGCGG-GaCAcGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 11222 0.71 0.356058
Target:  5'- cGGgcCGCCGCCUgcgGCGgGgUCGGCc -3'
miRNA:   3'- -UCauGCGGCGGGacaCGCgCgAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 11271 0.66 0.67805
Target:  5'- cGGUucgcGCuGCCGCCCc---CGCGCcCGGCg -3'
miRNA:   3'- -UCA----UG-CGGCGGGacacGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 11634 0.69 0.48692
Target:  5'- cGGUACGCgGgCCUGUuuuugggcuacugccGCGCGCUgCuGCa -3'
miRNA:   3'- -UCAUGCGgCgGGACA---------------CGCGCGA-GcCG- -5'
23583 3' -61.3 NC_005261.1 + 11897 0.66 0.648344
Target:  5'- --cACGCgCGCCCgccGCGgGCcCGGCc -3'
miRNA:   3'- ucaUGCG-GCGGGacaCGCgCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 12021 0.68 0.511247
Target:  5'- --aGCGCuCGCCCgcgaCGCGCUCGaGCc -3'
miRNA:   3'- ucaUGCG-GCGGGacacGCGCGAGC-CG- -5'
23583 3' -61.3 NC_005261.1 + 12318 0.66 0.628467
Target:  5'- cGUA-GCCGgCggGcGCGCGCUUGGCc -3'
miRNA:   3'- uCAUgCGGCgGgaCaCGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 12698 0.7 0.404066
Target:  5'- --gGCGCCGCCCUGcggGCgGCGCga-GCg -3'
miRNA:   3'- ucaUGCGGCGGGACa--CG-CGCGagcCG- -5'
23583 3' -61.3 NC_005261.1 + 12730 0.68 0.5496
Target:  5'- cGGgccCGCCGgccCCCUGgGCGgGCcCGGCg -3'
miRNA:   3'- -UCau-GCGGC---GGGACaCGCgCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 12824 0.66 0.658269
Target:  5'- --aGCGCCGCCC---GCGCcGCUcCGGa -3'
miRNA:   3'- ucaUGCGGCGGGacaCGCG-CGA-GCCg -5'
23583 3' -61.3 NC_005261.1 + 13077 0.72 0.326354
Target:  5'- cGUcCGCCgGCCCgucggcgGgcgGCGgGCUCGGCu -3'
miRNA:   3'- uCAuGCGG-CGGGa------Ca--CGCgCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 13289 0.66 0.628467
Target:  5'- cAGgGCGCCGgCaca-GCGCGCgCGGCg -3'
miRNA:   3'- -UCaUGCGGCgGgacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 13320 0.66 0.658269
Target:  5'- cGUACGCagCGCCCUcgcacuCGCGCggccagcggUCGGCg -3'
miRNA:   3'- uCAUGCG--GCGGGAcac---GCGCG---------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 13643 0.74 0.260897
Target:  5'- --cACGCCGCCCaacgaucagcgcgugGUGCGCGagCGGCg -3'
miRNA:   3'- ucaUGCGGCGGGa--------------CACGCGCgaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 13659 0.66 0.628467
Target:  5'- cGUGcCGCCGCCgCgGgggGgGCGCggGGCg -3'
miRNA:   3'- uCAU-GCGGCGG-GaCa--CgCGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 13889 0.67 0.598687
Target:  5'- --aAUGCCGCCCacUGagGCGCuGCUCuuuuuGGCg -3'
miRNA:   3'- ucaUGCGGCGGG--ACa-CGCG-CGAG-----CCG- -5'
23583 3' -61.3 NC_005261.1 + 13939 0.66 0.648344
Target:  5'- uAGUGCGCaacuGCCauuuuuUGUcgcggccggGCGCGCgggCGGCg -3'
miRNA:   3'- -UCAUGCGg---CGGg-----ACA---------CGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 14130 0.79 0.122305
Target:  5'- cGGUGC-CgGCCCUGUGCGCGCgcuacgCGGg -3'
miRNA:   3'- -UCAUGcGgCGGGACACGCGCGa-----GCCg -5'
23583 3' -61.3 NC_005261.1 + 15150 0.66 0.658269
Target:  5'- ---cCGCCGUCCgcgguggggGUGgGCGUagCGGCg -3'
miRNA:   3'- ucauGCGGCGGGa--------CACgCGCGa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.