miRNA display CGI


Results 41 - 60 of 549 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 121013 0.66 0.657277
Target:  5'- gAGgcugGCGCUGCUguccgugCUGgGCGCGCUgcucgccgccgCGGCa -3'
miRNA:   3'- -UCa---UGCGGCGG-------GACaCGCGCGA-----------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 84650 0.66 0.648344
Target:  5'- uGGgGCGCCGCCggcccgcggccgCUaGUGCGC-CUgGGCc -3'
miRNA:   3'- -UCaUGCGGCGG------------GA-CACGCGcGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 117737 0.66 0.628467
Target:  5'- ----aGCCgGCCCgcUGUcaGCGCUCGGCu -3'
miRNA:   3'- ucaugCGG-CGGGacACG--CGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 70783 0.66 0.638408
Target:  5'- cGUGCgggcggaccgGCUGCCCUuUGgGCGCU-GGCc -3'
miRNA:   3'- uCAUG----------CGGCGGGAcACgCGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 27699 0.66 0.658269
Target:  5'- cGUGCGCgCGCCCUccUGCGCcccGCagacgaCGGCc -3'
miRNA:   3'- uCAUGCG-GCGGGAc-ACGCG---CGa-----GCCG- -5'
23583 3' -61.3 NC_005261.1 + 7014 0.66 0.668173
Target:  5'- --cGCGCgGCCaCguacgcggGCGCGC-CGGCg -3'
miRNA:   3'- ucaUGCGgCGG-Gaca-----CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 73320 0.66 0.648344
Target:  5'- gAGcACGCCGCgCUGaaccaCGCGCUgcuggaccCGGCg -3'
miRNA:   3'- -UCaUGCGGCGgGACac---GCGCGA--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 106946 0.66 0.668173
Target:  5'- --cGCGCaccucgGCCCgg-GCGCGCuccgccUCGGCg -3'
miRNA:   3'- ucaUGCGg-----CGGGacaCGCGCG------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 12824 0.66 0.658269
Target:  5'- --aGCGCCGCCC---GCGCcGCUcCGGa -3'
miRNA:   3'- ucaUGCGGCGGGacaCGCG-CGA-GCCg -5'
23583 3' -61.3 NC_005261.1 + 133776 0.66 0.628467
Target:  5'- cGGgcCGCCGCCgCUGgaggGCcCGCUgcugacgcccucCGGCg -3'
miRNA:   3'- -UCauGCGGCGG-GACa---CGcGCGA------------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 65644 0.66 0.67805
Target:  5'- ---cCGCCucucGCCuCUG-GCGCGCgcCGGCg -3'
miRNA:   3'- ucauGCGG----CGG-GACaCGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 66611 0.66 0.67805
Target:  5'- ---cCGCCGCCCgGgccCGCGCccgggccgCGGCg -3'
miRNA:   3'- ucauGCGGCGGGaCac-GCGCGa-------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 52183 0.66 0.658269
Target:  5'- --cGCGCCGCCgUGgagaaCGUGCUC-GCa -3'
miRNA:   3'- ucaUGCGGCGGgACac---GCGCGAGcCG- -5'
23583 3' -61.3 NC_005261.1 + 135746 0.66 0.668173
Target:  5'- uGGcGCGCCucaGCCgCgcgGUGCGCUcCGGCg -3'
miRNA:   3'- -UCaUGCGG---CGG-GacaCGCGCGA-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 98360 0.66 0.638408
Target:  5'- --cGCGCgGCCUgcuggccgUGUGCcuggGCGCcCGGCg -3'
miRNA:   3'- ucaUGCGgCGGG--------ACACG----CGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 31650 0.66 0.652316
Target:  5'- aGGaGCGCCGCgcggcggccccggggCCgGcGCGCGC-CGGCc -3'
miRNA:   3'- -UCaUGCGGCG---------------GGaCaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 58109 0.66 0.632443
Target:  5'- --gGCGCCGCCgCUGccGCGgCGCccaagccgguaccgCGGCg -3'
miRNA:   3'- ucaUGCGGCGG-GACa-CGC-GCGa-------------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 118617 0.66 0.67805
Target:  5'- uGUGCGUgGUgCUG-GCGCGCUaccGCg -3'
miRNA:   3'- uCAUGCGgCGgGACaCGCGCGAgc-CG- -5'
23583 3' -61.3 NC_005261.1 + 128128 0.66 0.648344
Target:  5'- uGU-CGCCGCCgCUGccgGgGCGCggCGGg -3'
miRNA:   3'- uCAuGCGGCGG-GACa--CgCGCGa-GCCg -5'
23583 3' -61.3 NC_005261.1 + 13289 0.66 0.628467
Target:  5'- cAGgGCGCCGgCaca-GCGCGCgCGGCg -3'
miRNA:   3'- -UCaUGCGGCgGgacaCGCGCGaGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.