miRNA display CGI


Results 21 - 40 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 134349 0.67 0.618528
Target:  5'- --cGCGCuCGCCgaGcUGCGCGC-CGuGCu -3'
miRNA:   3'- ucaUGCG-GCGGgaC-ACGCGCGaGC-CG- -5'
23583 3' -61.3 NC_005261.1 + 134199 0.69 0.501828
Target:  5'- --gGCGCgGCUCg--GCGCGCgggucgCGGCg -3'
miRNA:   3'- ucaUGCGgCGGGacaCGCGCGa-----GCCG- -5'
23583 3' -61.3 NC_005261.1 + 134076 0.69 0.501828
Target:  5'- --cGCGCgGCUCaUGUGCGagcuCUCGGCg -3'
miRNA:   3'- ucaUGCGgCGGG-ACACGCgc--GAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 133885 0.68 0.559334
Target:  5'- uGGUcuGCGCaaGCCCgcgGCGCGCUgcUGGCc -3'
miRNA:   3'- -UCA--UGCGg-CGGGacaCGCGCGA--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 133843 0.74 0.260293
Target:  5'- ---cCGCCGCCCggccgcGUGCGC-UUCGGCg -3'
miRNA:   3'- ucauGCGGCGGGa-----CACGCGcGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 133831 0.7 0.420953
Target:  5'- -cUGCGCgGCCgC-GUGCGCGCcgUGGCc -3'
miRNA:   3'- ucAUGCGgCGG-GaCACGCGCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 133776 0.66 0.628467
Target:  5'- cGGgcCGCCGCCgCUGgaggGCcCGCUgcugacgcccucCGGCg -3'
miRNA:   3'- -UCauGCGGCGG-GACa---CGcGCGA------------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 133326 0.66 0.668173
Target:  5'- --cGCGCaGCuCCUGccggcacGCGCGCgCGGCg -3'
miRNA:   3'- ucaUGCGgCG-GGACa------CGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 133131 0.71 0.387613
Target:  5'- cGUGCGCgucuCCCUgcgGUGCGCGCucgccgccgUCGGCg -3'
miRNA:   3'- uCAUGCGgc--GGGA---CACGCGCG---------AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 133079 0.68 0.530297
Target:  5'- --gACGCgGCCCgccgGgccgagGCGCGCgagcgcCGGCg -3'
miRNA:   3'- ucaUGCGgCGGGa---Ca-----CGCGCGa-----GCCG- -5'
23583 3' -61.3 NC_005261.1 + 132530 0.69 0.447063
Target:  5'- gAGUACGagcgCGCCCUc-GCGCGCgagGGCg -3'
miRNA:   3'- -UCAUGCg---GCGGGAcaCGCGCGag-CCG- -5'
23583 3' -61.3 NC_005261.1 + 132453 0.69 0.447063
Target:  5'- cGUGCcccucgGCCGCCCUc--CGCGC-CGGCa -3'
miRNA:   3'- uCAUG------CGGCGGGAcacGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 132397 0.69 0.483226
Target:  5'- cGgcCGCCGuaaCCCg--GCGCGCaUCGGCc -3'
miRNA:   3'- uCauGCGGC---GGGacaCGCGCG-AGCCG- -5'
23583 3' -61.3 NC_005261.1 + 132158 0.7 0.404066
Target:  5'- gAGcGCGCCGCCgCUGcagGCaGCGCg-GGCg -3'
miRNA:   3'- -UCaUGCGGCGG-GACa--CG-CGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 131805 0.69 0.463155
Target:  5'- ---cCGCCGCgCCUGacgGCGCGCcgccgcuugacgCGGCg -3'
miRNA:   3'- ucauGCGGCG-GGACa--CGCGCGa-----------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 131678 0.74 0.237086
Target:  5'- gGGUGCGaCCGCCC--UGCGCGC--GGCg -3'
miRNA:   3'- -UCAUGC-GGCGGGacACGCGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 130838 0.7 0.395784
Target:  5'- cGUGCGCUcaaCCUUGcGCGCGCgccCGGCc -3'
miRNA:   3'- uCAUGCGGc--GGGACaCGCGCGa--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 130324 0.66 0.647351
Target:  5'- --aGCGCCauggacgGCCCg--GcCGCGCUCGGg -3'
miRNA:   3'- ucaUGCGG-------CGGGacaC-GCGCGAGCCg -5'
23583 3' -61.3 NC_005261.1 + 129825 0.66 0.648344
Target:  5'- -cUGCGCCcggauGCCCaGcGCGCGCUCcaGCa -3'
miRNA:   3'- ucAUGCGG-----CGGGaCaCGCGCGAGc-CG- -5'
23583 3' -61.3 NC_005261.1 + 129351 0.68 0.5496
Target:  5'- cGGUaGCGCC-CCCUuccGCGCGCgggucgcgCGGCu -3'
miRNA:   3'- -UCA-UGCGGcGGGAca-CGCGCGa-------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.