miRNA display CGI


Results 1 - 20 of 549 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23583 3' -61.3 NC_005261.1 + 137889 0.68 0.511247
Target:  5'- cGGUGCcgccGCCGCCCcugGUGCuCGCg-GGCc -3'
miRNA:   3'- -UCAUG----CGGCGGGa--CACGcGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 137809 0.73 0.278889
Target:  5'- --gGCGCCGCCCcugGUGCuCGCggGGCu -3'
miRNA:   3'- ucaUGCGGCGGGa--CACGcGCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 136649 0.71 0.371607
Target:  5'- --cGCGCCGCCaaccgcUGgGgGCUCGGCg -3'
miRNA:   3'- ucaUGCGGCGGgac---ACgCgCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 136438 0.66 0.67805
Target:  5'- cGGgGCGCCGCCgCUGcgGCucUGCcgCGGCg -3'
miRNA:   3'- -UCaUGCGGCGG-GACa-CGc-GCGa-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 136358 0.67 0.598687
Target:  5'- --cGCGCCGUgCUGgccucgcgGCGCGUcuUCGGg -3'
miRNA:   3'- ucaUGCGGCGgGACa-------CGCGCG--AGCCg -5'
23583 3' -61.3 NC_005261.1 + 136319 0.76 0.190723
Target:  5'- cAGUGCGCCGCgcgcuggCCUGagcgGCGCGCgcuGGCg -3'
miRNA:   3'- -UCAUGCGGCG-------GGACa---CGCGCGag-CCG- -5'
23583 3' -61.3 NC_005261.1 + 136096 0.76 0.169202
Target:  5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCGGCg-GgACaCGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 136005 0.68 0.511247
Target:  5'- cGGUGCGCggcgggcucuCGCaCCUGcucGCgGCGCUgGGCa -3'
miRNA:   3'- -UCAUGCG----------GCG-GGACa--CG-CGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 135961 0.7 0.420953
Target:  5'- --gGCGCCGCCCg--GCgaggacgaGCGC-CGGCg -3'
miRNA:   3'- ucaUGCGGCGGGacaCG--------CGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 135849 0.66 0.628467
Target:  5'- ---uCGCCGCCa---GCGCGCcgcugCGGCg -3'
miRNA:   3'- ucauGCGGCGGgacaCGCGCGa----GCCG- -5'
23583 3' -61.3 NC_005261.1 + 135746 0.66 0.668173
Target:  5'- uGGcGCGCCucaGCCgCgcgGUGCGCUcCGGCg -3'
miRNA:   3'- -UCaUGCGG---CGG-GacaCGCGCGA-GCCG- -5'
23583 3' -61.3 NC_005261.1 + 135641 0.68 0.530297
Target:  5'- -aUGCGCUGCuaCCUGcgcggGCGCGggCGGCc -3'
miRNA:   3'- ucAUGCGGCG--GGACa----CGCGCgaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 135591 0.69 0.483226
Target:  5'- ---cCGCUGCCCgcccGCGUGCUgGGCc -3'
miRNA:   3'- ucauGCGGCGGGaca-CGCGCGAgCCG- -5'
23583 3' -61.3 NC_005261.1 + 135440 0.69 0.474049
Target:  5'- --cACGCCGCCCaG-GCGgCGCg-GGCg -3'
miRNA:   3'- ucaUGCGGCGGGaCaCGC-GCGagCCG- -5'
23583 3' -61.3 NC_005261.1 + 134872 0.67 0.588798
Target:  5'- ---uCGCgGCCCUGaaggccgGCGCGCcgggcgccgCGGCg -3'
miRNA:   3'- ucauGCGgCGGGACa------CGCGCGa--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 134872 0.7 0.429555
Target:  5'- --cGCGCCcccgcgggcCCCUGcUGUGCGUUCGGUg -3'
miRNA:   3'- ucaUGCGGc--------GGGAC-ACGCGCGAGCCG- -5'
23583 3' -61.3 NC_005261.1 + 134714 0.69 0.447063
Target:  5'- cGgcCGCCGCgCUGgagcgGcCGCGCUggCGGCg -3'
miRNA:   3'- uCauGCGGCGgGACa----C-GCGCGA--GCCG- -5'
23583 3' -61.3 NC_005261.1 + 134644 0.66 0.638408
Target:  5'- --gGCGCgGCCCgcgacgcgGUggaGCGCGCgcgccuuagCGGCg -3'
miRNA:   3'- ucaUGCGgCGGGa-------CA---CGCGCGa--------GCCG- -5'
23583 3' -61.3 NC_005261.1 + 134497 0.79 0.122305
Target:  5'- cGGUGCGCCGCCg---GCGCGUcCGGCa -3'
miRNA:   3'- -UCAUGCGGCGGgacaCGCGCGaGCCG- -5'
23583 3' -61.3 NC_005261.1 + 134409 0.69 0.492487
Target:  5'- --aGCGCCcggGCCCgcggcaGCGCGCgagCGGCu -3'
miRNA:   3'- ucaUGCGG---CGGGaca---CGCGCGa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.