Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23584 | 5' | -55.2 | NC_005261.1 | + | 98805 | 0.67 | 0.892252 |
Target: 5'- -aACGGGUCgCcgGCGGCGUGCCgGa-- -3' miRNA: 3'- gaUGUUCAG-Ga-CGCUGCACGGgCagc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 132676 | 0.67 | 0.898195 |
Target: 5'- gUGCGAGgacaagaugggcuUCCgcGUGGcCGUGCCCGUCc -3' miRNA: 3'- gAUGUUC-------------AGGa-CGCU-GCACGGGCAGc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 1772 | 0.67 | 0.898844 |
Target: 5'- -cGCGAGUCuggggCUGCcGCGUGCCCcugCGa -3' miRNA: 3'- gaUGUUCAG-----GACGcUGCACGGGca-GC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 37447 | 0.67 | 0.898844 |
Target: 5'- cCUGCugGUCCUGCGgACGcGCCUcuaCGa -3' miRNA: 3'- -GAUGuuCAGGACGC-UGCaCGGGca-GC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 62247 | 0.66 | 0.911324 |
Target: 5'- gCUGCAcGUCCgGCGucaccugguaGCGgcGCCCGUUGu -3' miRNA: 3'- -GAUGUuCAGGaCGC----------UGCa-CGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 27748 | 0.66 | 0.917208 |
Target: 5'- -aGCuuGUCCUGCGugGUccacgagagcaGCCCGcCc -3' miRNA: 3'- gaUGuuCAGGACGCugCA-----------CGGGCaGc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 47538 | 0.66 | 0.922851 |
Target: 5'- -gACGGcGUUCccggGCGcggcgaaguugGCGUGCCCGUCGc -3' miRNA: 3'- gaUGUU-CAGGa---CGC-----------UGCACGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 90859 | 0.66 | 0.928253 |
Target: 5'- -gAC-GGUUgUGCGcGCGcuggUGCCCGUCGg -3' miRNA: 3'- gaUGuUCAGgACGC-UGC----ACGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 89260 | 0.66 | 0.928253 |
Target: 5'- aCUACGccUCggGCGAgGUGCCCGUg- -3' miRNA: 3'- -GAUGUucAGgaCGCUgCACGGGCAgc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 120447 | 0.66 | 0.928253 |
Target: 5'- -gGCGugcgCCUGCucuccgcgauaGACGgGCCCGUCGa -3' miRNA: 3'- gaUGUuca-GGACG-----------CUGCaCGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 135518 | 0.66 | 0.928253 |
Target: 5'- -gACGAGUgCCUGaCGugGUGCaaguuCGUUGc -3' miRNA: 3'- gaUGUUCA-GGAC-GCugCACGg----GCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 132479 | 0.66 | 0.928253 |
Target: 5'- -gGCAGcgccucgccGUCCUGgGACGcGCCCGaccgCGa -3' miRNA: 3'- gaUGUU---------CAGGACgCUGCaCGGGCa---GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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