miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 5' -55.2 NC_005261.1 + 29872 0.69 0.796738
Target:  5'- -gGCAGGgaugcgCCUGCGACGgcggcgGCCCuggcgcggGUCGc -3'
miRNA:   3'- gaUGUUCa-----GGACGCUGCa-----CGGG--------CAGC- -5'
23584 5' -55.2 NC_005261.1 + 136733 0.69 0.814525
Target:  5'- aCUGCAAGUCCcGCuGC-UGCaagCCGUCGg -3'
miRNA:   3'- -GAUGUUCAGGaCGcUGcACG---GGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 74719 0.69 0.823171
Target:  5'- uUGCGAGUUCaucGCGAC--GCCCGUCu -3'
miRNA:   3'- gAUGUUCAGGa--CGCUGcaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 91995 0.68 0.831643
Target:  5'- -cGCGg--CCUGCGACGcGCUCGUCc -3'
miRNA:   3'- gaUGUucaGGACGCUGCaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 21210 0.68 0.831643
Target:  5'- -cGCuGGcCCcggccGCGACGgcggGCCCGUCGg -3'
miRNA:   3'- gaUGuUCaGGa----CGCUGCa---CGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 124854 0.68 0.831643
Target:  5'- -cGCAGGU-CUGCGGCGUcgucGCCuuCGUCGu -3'
miRNA:   3'- gaUGUUCAgGACGCUGCA----CGG--GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 68425 0.68 0.831643
Target:  5'- -gGCGcGUCCUGCaccuguucGACGUGCCCa--- -3'
miRNA:   3'- gaUGUuCAGGACG--------CUGCACGGGcagc -5'
23584 5' -55.2 NC_005261.1 + 89151 0.68 0.831643
Target:  5'- -aGCGGGcCCgcgGCG-CGUGCCCGcuUCGc -3'
miRNA:   3'- gaUGUUCaGGa--CGCuGCACGGGC--AGC- -5'
23584 5' -55.2 NC_005261.1 + 17758 0.68 0.839932
Target:  5'- gUGCAGGUgUaGuCGACGgGCCCGUCu -3'
miRNA:   3'- gAUGUUCAgGaC-GCUGCaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 86248 0.68 0.847229
Target:  5'- aUGCAGcGUCgUGUGcgcgcacGCGUGCCgGUCGu -3'
miRNA:   3'- gAUGUU-CAGgACGC-------UGCACGGgCAGC- -5'
23584 5' -55.2 NC_005261.1 + 96195 0.68 0.84803
Target:  5'- -gGCGcAGUaCC-GCGACGgggccaUGCCCGUCGu -3'
miRNA:   3'- gaUGU-UCA-GGaCGCUGC------ACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 63049 0.68 0.84803
Target:  5'- ---aAGGUCC-GCGACaugcGCCCGUCGc -3'
miRNA:   3'- gaugUUCAGGaCGCUGca--CGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 68314 0.68 0.863626
Target:  5'- uCUGCGGccgCUU-CGACGUGCCgGUCGg -3'
miRNA:   3'- -GAUGUUca-GGAcGCUGCACGGgCAGC- -5'
23584 5' -55.2 NC_005261.1 + 74636 0.68 0.863626
Target:  5'- gCUGCGc-UUCUGgGACGaGCCCGUCu -3'
miRNA:   3'- -GAUGUucAGGACgCUGCaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 91338 0.68 0.863626
Target:  5'- aCUACAAGcUCCUGCuGCGcagcgagGCCCGcCc -3'
miRNA:   3'- -GAUGUUC-AGGACGcUGCa------CGGGCaGc -5'
23584 5' -55.2 NC_005261.1 + 12431 0.67 0.871112
Target:  5'- -gGCgGAGggCUUGCGGCGUcgGCCgCGUCGg -3'
miRNA:   3'- gaUG-UUCa-GGACGCUGCA--CGG-GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 19868 0.67 0.871112
Target:  5'- -cGCGAGaCCccGcCGGCGgGCCCGUCGu -3'
miRNA:   3'- gaUGUUCaGGa-C-GCUGCaCGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 122485 0.67 0.871112
Target:  5'- -gGCGAGgcggucggCCUGCGcGCGgacgGCcCCGUCGc -3'
miRNA:   3'- gaUGUUCa-------GGACGC-UGCa---CG-GGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 5251 0.67 0.878382
Target:  5'- gUGCGGGUCgCggugcgcgGCGACGaaggcgGCCaCGUCGg -3'
miRNA:   3'- gAUGUUCAG-Ga-------CGCUGCa-----CGG-GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 52083 0.67 0.878382
Target:  5'- gUACAGcgaCUGCGACGUGCUggggaacuacgCGUCGu -3'
miRNA:   3'- gAUGUUcagGACGCUGCACGG-----------GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.