miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 5' -55.2 NC_005261.1 + 83376 0.69 0.775547
Target:  5'- gUGCGGGUucagCCUGCGGCGccggcagcuagcccUGCCCG-CGu -3'
miRNA:   3'- gAUGUUCA----GGACGCUGC--------------ACGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 127212 0.69 0.778352
Target:  5'- -gACGGGcCCgGCGACGaGgCCGUCGa -3'
miRNA:   3'- gaUGUUCaGGaCGCUGCaCgGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 29872 0.69 0.796738
Target:  5'- -gGCAGGgaugcgCCUGCGACGgcggcgGCCCuggcgcggGUCGc -3'
miRNA:   3'- gaUGUUCa-----GGACGCUGCa-----CGGG--------CAGC- -5'
23584 5' -55.2 NC_005261.1 + 74719 0.69 0.823171
Target:  5'- uUGCGAGUUCaucGCGAC--GCCCGUCu -3'
miRNA:   3'- gAUGUUCAGGa--CGCUGcaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 91338 0.68 0.863626
Target:  5'- aCUACAAGcUCCUGCuGCGcagcgagGCCCGcCc -3'
miRNA:   3'- -GAUGUUC-AGGACGcUGCa------CGGGCaGc -5'
23584 5' -55.2 NC_005261.1 + 74636 0.68 0.863626
Target:  5'- gCUGCGc-UUCUGgGACGaGCCCGUCu -3'
miRNA:   3'- -GAUGUucAGGACgCUGCaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 68314 0.68 0.863626
Target:  5'- uCUGCGGccgCUU-CGACGUGCCgGUCGg -3'
miRNA:   3'- -GAUGUUca-GGAcGCUGCACGGgCAGC- -5'
23584 5' -55.2 NC_005261.1 + 86248 0.68 0.847229
Target:  5'- aUGCAGcGUCgUGUGcgcgcacGCGUGCCgGUCGu -3'
miRNA:   3'- gAUGUU-CAGgACGC-------UGCACGGgCAGC- -5'
23584 5' -55.2 NC_005261.1 + 21210 0.68 0.831643
Target:  5'- -cGCuGGcCCcggccGCGACGgcggGCCCGUCGg -3'
miRNA:   3'- gaUGuUCaGGa----CGCUGCa---CGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 124854 0.68 0.831643
Target:  5'- -cGCAGGU-CUGCGGCGUcgucGCCuuCGUCGu -3'
miRNA:   3'- gaUGUUCAgGACGCUGCA----CGG--GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 68425 0.68 0.831643
Target:  5'- -gGCGcGUCCUGCaccuguucGACGUGCCCa--- -3'
miRNA:   3'- gaUGUuCAGGACG--------CUGCACGGGcagc -5'
23584 5' -55.2 NC_005261.1 + 12431 0.67 0.871112
Target:  5'- -gGCgGAGggCUUGCGGCGUcgGCCgCGUCGg -3'
miRNA:   3'- gaUG-UUCa-GGACGCUGCA--CGG-GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 19868 0.67 0.871112
Target:  5'- -cGCGAGaCCccGcCGGCGgGCCCGUCGu -3'
miRNA:   3'- gaUGUUCaGGa-C-GCUGCaCGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 98805 0.67 0.892252
Target:  5'- -aACGGGUCgCcgGCGGCGUGCCgGa-- -3'
miRNA:   3'- gaUGUUCAG-Ga-CGCUGCACGGgCagc -5'
23584 5' -55.2 NC_005261.1 + 132676 0.67 0.898195
Target:  5'- gUGCGAGgacaagaugggcuUCCgcGUGGcCGUGCCCGUCc -3'
miRNA:   3'- gAUGUUC-------------AGGa-CGCU-GCACGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 62247 0.66 0.911324
Target:  5'- gCUGCAcGUCCgGCGucaccugguaGCGgcGCCCGUUGu -3'
miRNA:   3'- -GAUGUuCAGGaCGC----------UGCa-CGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 47538 0.66 0.922851
Target:  5'- -gACGGcGUUCccggGCGcggcgaaguugGCGUGCCCGUCGc -3'
miRNA:   3'- gaUGUU-CAGGa---CGC-----------UGCACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 135518 0.66 0.928253
Target:  5'- -gACGAGUgCCUGaCGugGUGCaaguuCGUUGc -3'
miRNA:   3'- gaUGUUCA-GGAC-GCugCACGg----GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 120447 0.66 0.928253
Target:  5'- -gGCGugcgCCUGCucuccgcgauaGACGgGCCCGUCGa -3'
miRNA:   3'- gaUGUuca-GGACG-----------CUGCaCGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 111048 1.08 0.0037
Target:  5'- gCUACAAGUCCUGCGACGUGCCCGUCGu -3'
miRNA:   3'- -GAUGUUCAGGACGCUGCACGGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.