Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23584 | 5' | -55.2 | NC_005261.1 | + | 1772 | 0.67 | 0.898844 |
Target: 5'- -cGCGAGUCuggggCUGCcGCGUGCCCcugCGa -3' miRNA: 3'- gaUGUUCAG-----GACGcUGCACGGGca-GC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 91995 | 0.68 | 0.831643 |
Target: 5'- -cGCGg--CCUGCGACGcGCUCGUCc -3' miRNA: 3'- gaUGUucaGGACGCUGCaCGGGCAGc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 17758 | 0.68 | 0.839932 |
Target: 5'- gUGCAGGUgUaGuCGACGgGCCCGUCu -3' miRNA: 3'- gAUGUUCAgGaC-GCUGCaCGGGCAGc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 96195 | 0.68 | 0.84803 |
Target: 5'- -gGCGcAGUaCC-GCGACGgggccaUGCCCGUCGu -3' miRNA: 3'- gaUGU-UCA-GGaCGCUGC------ACGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 63049 | 0.68 | 0.84803 |
Target: 5'- ---aAGGUCC-GCGACaugcGCCCGUCGc -3' miRNA: 3'- gaugUUCAGGaCGCUGca--CGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 122485 | 0.67 | 0.871112 |
Target: 5'- -gGCGAGgcggucggCCUGCGcGCGgacgGCcCCGUCGc -3' miRNA: 3'- gaUGUUCa-------GGACGC-UGCa---CG-GGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 52083 | 0.67 | 0.878382 |
Target: 5'- gUACAGcgaCUGCGACGUGCUggggaacuacgCGUCGu -3' miRNA: 3'- gAUGUUcagGACGCUGCACGG-----------GCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 5251 | 0.67 | 0.878382 |
Target: 5'- gUGCGGGUCgCggugcgcgGCGACGaaggcgGCCaCGUCGg -3' miRNA: 3'- gAUGUUCAG-Ga-------CGCUGCa-----CGG-GCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 37447 | 0.67 | 0.898844 |
Target: 5'- cCUGCugGUCCUGCGgACGcGCCUcuaCGa -3' miRNA: 3'- -GAUGuuCAGGACGC-UGCaCGGGca-GC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 89151 | 0.68 | 0.831643 |
Target: 5'- -aGCGGGcCCgcgGCG-CGUGCCCGcuUCGc -3' miRNA: 3'- gaUGUUCaGGa--CGCuGCACGGGC--AGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 74719 | 0.69 | 0.823171 |
Target: 5'- uUGCGAGUUCaucGCGAC--GCCCGUCu -3' miRNA: 3'- gAUGUUCAGGa--CGCUGcaCGGGCAGc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 29872 | 0.69 | 0.796738 |
Target: 5'- -gGCAGGgaugcgCCUGCGACGgcggcgGCCCuggcgcggGUCGc -3' miRNA: 3'- gaUGUUCa-----GGACGCUGCa-----CGGG--------CAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 109756 | 0.71 | 0.700266 |
Target: 5'- gUACAGGUCgaGCGugGccggcucgGCCCGcCGg -3' miRNA: 3'- gAUGUUCAGgaCGCugCa-------CGGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 88047 | 0.71 | 0.72032 |
Target: 5'- gCUGCAccGGcUgCUGCGGCgGUGCCCG-CGg -3' miRNA: 3'- -GAUGU--UC-AgGACGCUG-CACGGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 98747 | 0.71 | 0.72032 |
Target: 5'- -gGCGAucaucGUCC-GCGGCGgGCCCGUUGg -3' miRNA: 3'- gaUGUU-----CAGGaCGCUGCaCGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 89196 | 0.7 | 0.740069 |
Target: 5'- -gGCGGcugCCUGCG-CGUGCCCGcCGc -3' miRNA: 3'- gaUGUUca-GGACGCuGCACGGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 17253 | 0.7 | 0.768956 |
Target: 5'- aCUACGGGgCCUGCGGCGgcacgcGcCCCG-CGg -3' miRNA: 3'- -GAUGUUCaGGACGCUGCa-----C-GGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 80726 | 0.7 | 0.768956 |
Target: 5'- -aAgAAGgcccgCCgccGgGACGUGCCCGUCGc -3' miRNA: 3'- gaUgUUCa----GGa--CgCUGCACGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 83376 | 0.69 | 0.775547 |
Target: 5'- gUGCGGGUucagCCUGCGGCGccggcagcuagcccUGCCCG-CGu -3' miRNA: 3'- gAUGUUCA----GGACGCUGC--------------ACGGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 127212 | 0.69 | 0.778352 |
Target: 5'- -gACGGGcCCgGCGACGaGgCCGUCGa -3' miRNA: 3'- gaUGUUCaGGaCGCUGCaCgGGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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