Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23584 | 5' | -55.2 | NC_005261.1 | + | 1772 | 0.67 | 0.898844 |
Target: 5'- -cGCGAGUCuggggCUGCcGCGUGCCCcugCGa -3' miRNA: 3'- gaUGUUCAG-----GACGcUGCACGGGca-GC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 4451 | 0.76 | 0.441598 |
Target: 5'- -aGCGGGcCCUccaGCGGCGgcgGCCCGUCGc -3' miRNA: 3'- gaUGUUCaGGA---CGCUGCa--CGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 5238 | 0.74 | 0.527292 |
Target: 5'- gUACAGGUCgaGCGuggccggcuCGUGCCCGcCGg -3' miRNA: 3'- gAUGUUCAGgaCGCu--------GCACGGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 5251 | 0.67 | 0.878382 |
Target: 5'- gUGCGGGUCgCggugcgcgGCGACGaaggcgGCCaCGUCGg -3' miRNA: 3'- gAUGUUCAG-Ga-------CGCUGCa-----CGG-GCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 12431 | 0.67 | 0.871112 |
Target: 5'- -gGCgGAGggCUUGCGGCGUcgGCCgCGUCGg -3' miRNA: 3'- gaUG-UUCa-GGACGCUGCA--CGG-GCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 17253 | 0.7 | 0.768956 |
Target: 5'- aCUACGGGgCCUGCGGCGgcacgcGcCCCG-CGg -3' miRNA: 3'- -GAUGUUCaGGACGCUGCa-----C-GGGCaGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 17758 | 0.68 | 0.839932 |
Target: 5'- gUGCAGGUgUaGuCGACGgGCCCGUCu -3' miRNA: 3'- gAUGUUCAgGaC-GCUGCaCGGGCAGc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 18594 | 0.7 | 0.768956 |
Target: 5'- -gGCGcAGcCgUGCGAgGUGUCCGUCGc -3' miRNA: 3'- gaUGU-UCaGgACGCUgCACGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 19868 | 0.67 | 0.871112 |
Target: 5'- -cGCGAGaCCccGcCGGCGgGCCCGUCGu -3' miRNA: 3'- gaUGUUCaGGa-C-GCUGCaCGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 21210 | 0.68 | 0.831643 |
Target: 5'- -cGCuGGcCCcggccGCGACGgcggGCCCGUCGg -3' miRNA: 3'- gaUGuUCaGGa----CGCUGCa---CGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 22695 | 0.69 | 0.778352 |
Target: 5'- -gACGGGcCCgGCGACGaGgCCGUCGa -3' miRNA: 3'- gaUGUUCaGGaCGCUGCaCgGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 27748 | 0.66 | 0.917208 |
Target: 5'- -aGCuuGUCCUGCGugGUccacgagagcaGCCCGcCc -3' miRNA: 3'- gaUGuuCAGGACGCugCA-----------CGGGCaGc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 29872 | 0.69 | 0.796738 |
Target: 5'- -gGCAGGgaugcgCCUGCGACGgcggcgGCCCuggcgcggGUCGc -3' miRNA: 3'- gaUGUUCa-----GGACGCUGCa-----CGGG--------CAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 37447 | 0.67 | 0.898844 |
Target: 5'- cCUGCugGUCCUGCGgACGcGCCUcuaCGa -3' miRNA: 3'- -GAUGuuCAGGACGC-UGCaCGGGca-GC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 47538 | 0.66 | 0.922851 |
Target: 5'- -gACGGcGUUCccggGCGcggcgaaguugGCGUGCCCGUCGc -3' miRNA: 3'- gaUGUU-CAGGa---CGC-----------UGCACGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 52083 | 0.67 | 0.878382 |
Target: 5'- gUACAGcgaCUGCGACGUGCUggggaacuacgCGUCGu -3' miRNA: 3'- gAUGUUcagGACGCUGCACGG-----------GCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 62247 | 0.66 | 0.911324 |
Target: 5'- gCUGCAcGUCCgGCGucaccugguaGCGgcGCCCGUUGu -3' miRNA: 3'- -GAUGUuCAGGaCGC----------UGCa-CGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 63049 | 0.68 | 0.84803 |
Target: 5'- ---aAGGUCC-GCGACaugcGCCCGUCGc -3' miRNA: 3'- gaugUUCAGGaCGCUGca--CGGGCAGC- -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 63697 | 0.77 | 0.380698 |
Target: 5'- aUACAGGUUCUGCGGCGUguuGCCCagGUCc -3' miRNA: 3'- gAUGUUCAGGACGCUGCA---CGGG--CAGc -5' |
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23584 | 5' | -55.2 | NC_005261.1 | + | 68314 | 0.68 | 0.863626 |
Target: 5'- uCUGCGGccgCUU-CGACGUGCCgGUCGg -3' miRNA: 3'- -GAUGUUca-GGAcGCUGCACGGgCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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